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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Groundwater metagenome 4000601.lucy.pga.C1
Anticodon = CTG
HIT:
2 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.804259 (6 seq.)
>W1710880617
LMSL01000038
Gammaproteobacteria
Frateuria sp. Soil773 [LMSL]
74821
74748
-
Gln
CTG
[ENA]
¡û
>W1711387179
MEGJ01000018
Gammaproteobacteria
Rhodanobacter sp. SCN 69-32 [MEGJ]
48157
48084
-
Gln
CTG
[ENA]
¡û
>W1711506103
MKWC01000009
Gammaproteobacteria
Rhodanobacter sp. 68-29 [MKWC]
37663
37736
+
Gln
CTG
[ENA]
¡û
>WENV181401768
OFTX01005682
[OFTX] sludge metagenome; sludge
259
186
-
Gln
CTG
[ENA]
¢þ
>ENV09004073
ADIG01003742
Groundwater metagenome 4000601.lucy.pga.C1
433
506
+
Gln
CTG
[ENA]
¡û
>W1610742963
LMSL01000038
Gammaproteobacteria
Frateuria sp. Soil773 [LMSL]
74821
74748
-
Gln
CTG
[ENA]
¡û
Identical group No.813222 (1 seq.)
>ENV09004009
ADIG01001037
Groundwater metagenome 4000601.lucy.pga.C1
61835
61908
+
Gln
CTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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