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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Groundwater metagenome 4000601.lucy.pga.C1
Anticodon = GAC
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.654994 (105 seq.)
>W1710863216
LMEX01000004
Gammaproteobacteria
Rhodanobacter sp. Root480 [LMEX]
252606
252532
-
Val
GAC
[ENA]
¡û
>W1710864983
LMGH01000015
Gammaproteobacteria
Rhodanobacter sp. Root561 [LMGH]
265981
265907
-
Val
GAC
[ENA]
¡û
>W1710865702
LMGW01000004
Gammaproteobacteria
Rhodanobacter sp. Root627 [LMGW]
244301
244227
-
Val
GAC
[ENA]
¡û
>W1710866692
LMHR01000069
Gammaproteobacteria
Rhodanobacter sp. Root179 [LMHR]
26411
26485
+
Val
GAC
[ENA]
¡û
>W1710880541
LMSK01000001
Gammaproteobacteria
Rhodanobacter sp. Soil772 [LMSK]
28345
28419
+
Val
GAC
[ENA]
¡û
>W1710880632
LMSL01000041
Gammaproteobacteria
Frateuria sp. Soil773 [LMSL]
249170
249096
-
Val
GAC
[ENA]
¡û
>W1711147404
LVJP01003740
Gammaproteobacteria
Rhodanobacter denitrificans [LVJP]
7511
7585
+
Val
GAC
[ENA]
¡û
>W1711147455
LVJQ01002692
Gammaproteobacteria
Rhodanobacter sp. FW104-R5 [LVJQ]
75
1
-
Val
GAC
[ENA]
¡û
>W1711147479
LVJR01000012
Gammaproteobacteria
Rhodanobacter sp. FW104-R8 [LVJR]
17382
17308
-
Val
GAC
[ENA]
¡û
>W1711147522
LVJS01000025
Gammaproteobacteria
Rhodanobacter thiooxydans [LVJS]
25640
25714
+
Val
GAC
[ENA]
¡û
>W1711147599
LVJT01000099
Gammaproteobacteria
Rhodanobacter sp. FW510-T8 [LVJT]
25075
25001
-
Val
GAC
[ENA]
¡û
>W1711147646
LVJU01000118
Gammaproteobacteria
Rhodanobacter sp. FW510-R10 [LVJU]
19911
19985
+
Val
GAC
[ENA]
¡û
>W1711147654
LVJV01000236
Gammaproteobacteria
Rhodanobacter sp. FW510-R12 [LVJV]
5601
5675
+
Val
GAC
[ENA]
¡û
>W1711147675
LVJV01000979
Gammaproteobacteria
Rhodanobacter sp. FW510-R12 [LVJV]
2926
3000
+
Val
GAC
[ENA]
¡û
>W1711386219
MEFB01000001
Gammaproteobacteria
Rhodanobacter sp. SCN 67-45 [MEFB]
54643
54569
-
Val
GAC
[ENA]
¡û
>W1711387232
MEGL01000001
Gammaproteobacteria
Rhodanobacter sp. SCN 68-63 [MEGL]
27965
27891
-
Val
GAC
[ENA]
¡û
>W1711503643
MKTU01000026
Gammaproteobacteria
Rhodanobacter sp. 67-28 [MKTU]
124849
124923
+
Val
GAC
[ENA]
¡û
>W1711505328
MKVK01000014
Alphaproteobacteria
Magnetospirillum sp. 64-120 [MKVK]
133646
133720
+
Val
GAC
[ENA]
¡û
>W1711506086
MKWC01000007
Gammaproteobacteria
Rhodanobacter sp. 68-29 [MKWC]
114599
114525
-
Val
GAC
[ENA]
¡û
>W1711751244
MUNP01000028
Gammaproteobacteria
Rhodanobacter sp. C06 [MUNP]
70025
69951
-
Val
GAC
[ENA]
¡û
>W1711751287
MUNQ01000006
Gammaproteobacteria
Rhodanobacter sp. C05 [MUNQ]
415134
415208
+
Val
GAC
[ENA]
¡û
>W1711751355
MUNR01000011
Gammaproteobacteria
Rhodanobacter sp. C01 [MUNR]
438474
438548
+
Val
GAC
[ENA]
¡û
>W1711751493
MUNU01000015
Gammaproteobacteria
Rhodanobacter sp. B05 [MUNU]
123210
123284
+
Val
GAC
[ENA]
¡û
>W1711751523
MUNV01000009
Gammaproteobacteria
Rhodanobacter sp. B04 [MUNV]
43731
43657
-
Val
GAC
[ENA]
¡û
>C171063370
CP017480
Gammaproteobacteria
Luteibacter rhizovicinus DSM 16549 LJ96 [CP017480]
2926885
2926959
+
Val
GAC
-
¡û
>W131046202
AMSF01000082
Gammaproteobacteria
Dyella ginsengisoli LA-4 [AMSF]
51772
51698
-
Val
GAC
[ENA]
¡û
>W131218959
ATYD01000178
Gammaproteobacteria
Rhodanobacter sp. OR444 [ATYD]
7419
7493
+
Val
GAC
[ENA]
¡û
>W131219036
ATYF01000007
Gammaproteobacteria
Rhodanobacter sp. OR92 [ATYF]
64348
64274
-
Val
GAC
[ENA]
¡û
>WENV180035769
FTLB01005601
[FTLB] metagenome; soil
116
190
+
Val
GAC
[ENA]
¢þ
>WENV180259737
OBEQ011134786
[OBEQ] groundwater metagenome; groundwater
179
105
-
Val
GAC
[ENA]
¢þ
>WENV181221721
OFCW01003780
[OFCW] microbial mat metagenome; Microbial Mat
2
76
+
Val
GAC
[ENA]
¢þ
>WENV181308110
OFIS01000224
[OFIS] sludge metagenome; sludge
37803
37877
+
Val
GAC
[ENA]
¢þ
>WENV181401397
OFTX01000101
[OFTX] sludge metagenome; sludge
15388
15314
-
Val
GAC
[ENA]
¢þ
>WENV181401708
OFTX01003430
[OFTX] sludge metagenome; sludge
3704
3630
-
Val
GAC
[ENA]
¢þ
>WENV181401787
OFTX01006520
[OFTX] sludge metagenome; sludge
1022
948
-
Val
GAC
[ENA]
¢þ
>WENV181402064
OFTY01000076
[OFTY] sludge metagenome; sludge
37545
37619
+
Val
GAC
[ENA]
¢þ
>W141151888
AXBJ01000004
Gammaproteobacteria
Rhodanobacter sp. OR87 [AXBJ]
69589
69515
-
Val
GAC
[ENA]
¡û
>WENV170706106
LNAP01001134
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
5545
5619
+
Val
GAC
[ENA]
¢þ
>C191186005
CP041046
Gammaproteobacteria
Luteibacter pinisoli MAH-14 [CP041046]
1388457
1388531
+
Val
GAC
-
¡û
>W141820694
JQNB01000001
Gammaproteobacteria
Luteibacter sp. 9135 [JQNB]
2285817
2285891
+
Val
GAC
[ENA]
¡û
>W141820816
JQND01000001
Gammaproteobacteria
Luteibacter sp. 9145 [JQND]
3271512
3271438
-
Val
GAC
[ENA]
¡û
>W141821258
JQNL01000001
Gammaproteobacteria
Luteibacter sp. 9143a 9143 [JQNL]
3655368
3655442
+
Val
GAC
[ENA]
¡û
>W1910821927
MWIO01000013
Gammaproteobacteria
Rhodanobacter lindaniclasticus DSM 17932 [MWIO]
41390
41316
-
Val
GAC
[ENA]
¡û
>W1910841554
NADW01000002
Bacillota
Bacillus sp. SRB_336 [NADW]
151727
151801
+
Val
GAC
[ENA]
¡û
>W1910896603
NFZS01000004
Gammaproteobacteria
Dyella jiangningensis FCAV SCS01 [NFZS]
705697
705623
-
Val
GAC
[ENA]
¡û
>W1911199787
NRDP01000003
Gammaproteobacteria
Dyella sp. AD56 [NRDP]
132631
132705
+
Val
GAC
[ENA]
¡û
>W1810071348
PEER01000009
Gammaproteobacteria
Rhodanobacter sp. TND4EH1 [PEER]
17623
17697
+
Val
GAC
[ENA]
¡û
>SRA1003496
SRR002326.506539
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
15
89
+
Val
GAC
[SRA]
>W1810477568
QAOX01000004
Gammaproteobacteria
Luteibacter sp. OK325 [QAOX]
440372
440298
-
Val
GAC
[ENA]
¡û
>W1810485569
QAVX01000005
Gammaproteobacteria
Dyella sp. C11 [QAVX]
144549
144475
-
Val
GAC
[ENA]
¡û
>W1810514371
QBUW01000005
Gammaproteobacteria
Rhodanobacter thiooxydans CR1 [QBUW]
96612
96686
+
Val
GAC
[ENA]
¡û
>W1810591932
QFWQ01000004
Gammaproteobacteria
Rhodanobacter denitrificans Yn1 [QFWQ]
138825
138899
+
Val
GAC
[ENA]
¡û
>W1810628351
QICJ01000006
Gammaproteobacteria
Dyella sp. AtDHG13 [QICJ]
149080
149154
+
Val
GAC
[ENA]
¡û
>W1810629442
QIRF01000023
Gammaproteobacteria
Dyella sp. C9 [QIRF]
56423
56497
+
Val
GAC
[ENA]
¡û
>W1810762601
QQAH01000005
Gammaproteobacteria
Dyella tabacisoli L4-6 [QQAH]
126230
126304
+
Val
GAC
[ENA]
¡û
>W1810783244
QQSY01000001
Gammaproteobacteria
Dyella solisilvae DHG54 [QQSY]
1091929
1091855
-
Val
GAC
[ENA]
¡û
>C151023710
CP007444
Gammaproteobacteria
Dyella jiangningensis SBZ3-12 [CP007444]
594133
594207
+
Val
GAC
[Ensembl]
¡û
>C151039075
CP008884
Gammaproteobacteria
Dyella japonica A8 [CP008884]
2009547
2009621
+
Val
GAC
[Ensembl]
¡û
>ENV09003376
ADGO01027222
Compost metagenome contig00001
664
590
-
Val
GAC
[ENA]
¡û
>ENV09004028
ADIG01001045
Groundwater metagenome 4000601.lucy.pga.C1
112692
112766
+
Val
GAC
[ENA]
¡û
>W1511305092
JPLB01000013
Gammaproteobacteria
Luteibacter rhizovicinus DSM 16549 [JPLB]
135346
135420
+
Val
GAC
[ENA]
¡û
>W1511305269
JPLD01000262
Gammaproteobacteria
Xanthomonas hyacinthi DSM 19077 [JPLD]
18879
18805
-
Val
GAC
[ENA]
¡û
>W1511352597
JROI01000008
Gammaproteobacteria
Oleiagrimonas soli 3.5X [JROI]
312942
313016
+
Val
GAC
[ENA]
¡û
>W1511433892
JUHO01000001
Gammaproteobacteria
Luteibacter sp. 9133 [JUHO]
1272985
1273059
+
Val
GAC
[ENA]
¡û
>W1511547590
JZRB01000030
Gammaproteobacteria
Luteibacter yeojuensis SU11 [JZRB]
135613
135539
-
Val
GAC
[ENA]
¡û
>W11180878
AGIL01000004
Gammaproteobacteria
Rhodanobacter denitrificans 2APBS1 [AGIL]
185822
185896
+
Val
GAC
[ENA]
¡û
>C121011582
CP003350
Gammaproteobacteria
Frateuria aurantia DSM 6220 [CP003350]
2640581
2640507
-
Val
GAC
[Ensembl]
¡û
>C161078250
CP014841
Gammaproteobacteria
Dyella thiooxydans ATSB10 [CP014841]
2173612
2173538
-
Val
GAC
[Ensembl]
¡û
>C161085651
CP015249
Gammaproteobacteria
Dokdonella koreensis DS-123 [CP015249]
2871833
2871759
-
Val
GAC
[Ensembl]
¡û
>W121017554
AGRV01000013
Gammaproteobacteria
Frateuria aurantia DSM 6220 [AGRV]
60030
60104
+
Val
GAC
[ENA]
¡û
>W121071210
AJXS01000379
Gammaproteobacteria
Rhodanobacter sp. 115 [AJXS]
7729
7803
+
Val
GAC
[ENA]
¡û
>W121071248
AJXT01000024
Gammaproteobacteria
Rhodanobacter spathiphylli B39 [AJXT]
42255
42329
+
Val
GAC
[ENA]
¡û
>W121071275
AJXU01000015
Gammaproteobacteria
Rhodanobacter fulvus Jip2 [AJXU]
88643
88569
-
Val
GAC
[ENA]
¡û
>W121071319
AJXV01000003
Gammaproteobacteria
Rhodanobacter denitrificans 116-2 [AJXV]
116842
116916
+
Val
GAC
[ENA]
¡û
>W121071367
AJXW01000003
Gammaproteobacteria
Rhodanobacter thiooxydans LCS2 [AJXW]
68875
68949
+
Val
GAC
[ENA]
¡û
>W121113914
ALOY01000183
Gammaproteobacteria
Dyella japonica A8 [ALOY]
87973
88047
+
Val
GAC
[ENA]
¡û
>C131003725
CP003470
Gammaproteobacteria
Rhodanobacter denitrificans 2APBS1 [CP003470]
2935859
2935785
-
Val
GAC
-
¡û
>W1610616786
LGRQ01000140
Gammaproteobacteria
Luteibacter rhizovicinus [LGRQ]
6414
6488
+
Val
GAC
[ENA]
¡û
>W1610725562
LMEX01000004
Gammaproteobacteria
Rhodanobacter sp. Root480 [LMEX]
252606
252532
-
Val
GAC
[ENA]
¡û
>W1610727329
LMGH01000015
Gammaproteobacteria
Rhodanobacter sp. Root561 [LMGH]
265981
265907
-
Val
GAC
[ENA]
¡û
>W1610728048
LMGW01000004
Gammaproteobacteria
Rhodanobacter sp. Root627 [LMGW]
244301
244227
-
Val
GAC
[ENA]
¡û
>W1610729038
LMHR01000069
Gammaproteobacteria
Rhodanobacter sp. Root179 [LMHR]
26411
26485
+
Val
GAC
[ENA]
¡û
>W1610742887
LMSK01000001
Gammaproteobacteria
Rhodanobacter sp. Soil772 [LMSK]
28345
28419
+
Val
GAC
[ENA]
¡û
>W1610742978
LMSL01000041
Gammaproteobacteria
Frateuria sp. Soil773 [LMSL]
249170
249096
-
Val
GAC
[ENA]
¡û
>W1610958357
LVJP01003740
Gammaproteobacteria
Rhodanobacter denitrificans [LVJP]
7511
7585
+
Val
GAC
[ENA]
¡û
>W1610958408
LVJQ01002692
Gammaproteobacteria
Rhodanobacter sp. FW104-R5 [LVJQ]
75
1
-
Val
GAC
[ENA]
¡û
>W1610958432
LVJR01000012
Gammaproteobacteria
Rhodanobacter sp. FW104-R8 [LVJR]
17382
17308
-
Val
GAC
[ENA]
¡û
>W1610958475
LVJS01000025
Gammaproteobacteria
Rhodanobacter thiooxydans [LVJS]
25640
25714
+
Val
GAC
[ENA]
¡û
>W1610958552
LVJT01000099
Gammaproteobacteria
Rhodanobacter sp. FW510-T8 [LVJT]
25075
25001
-
Val
GAC
[ENA]
¡û
>W1610958599
LVJU01000118
Gammaproteobacteria
Rhodanobacter sp. FW510-R10 [LVJU]
19911
19985
+
Val
GAC
[ENA]
¡û
>W1610958607
LVJV01000236
Gammaproteobacteria
Rhodanobacter sp. FW510-R12 [LVJV]
5601
5675
+
Val
GAC
[ENA]
¡û
>W1610958628
LVJV01000979
Gammaproteobacteria
Rhodanobacter sp. FW510-R12 [LVJV]
2926
3000
+
Val
GAC
[ENA]
¡û
>W1710515285
FNBR01000005
Gammaproteobacteria
Dyella sp. 333MFSha [FNBR]
101981
101907
-
Val
GAC
[ENA]
¡û
>W1710519815
FNFA01000005
Gammaproteobacteria
Dyella jiangningensis [FNFA]
202148
202074
-
Val
GAC
[ENA]
¡û
>W1710541170
FNYC01000006
Gammaproteobacteria
Frateuria terrea [FNYC]
96782
96856
+
Val
GAC
[ENA]
¡û
>W1710545795
FOBU01000002
Gammaproteobacteria
Luteibacter sp. UNCMF331Sha3.1 [FOBU]
604709
604783
+
Val
GAC
[ENA]
¡û
>W1710548700
FODZ01000003
Gammaproteobacteria
Luteibacter sp. UNC138MFCol5.1 [FODZ]
624826
624752
-
Val
GAC
[ENA]
¡û
>W1710555201
FOJE01000001
Gammaproteobacteria
Luteibacter sp. 329MFSha [FOJE]
1928775
1928701
-
Val
GAC
[ENA]
¡û
>W1710567372
FOSR01000017
Gammaproteobacteria
Rhodanobacter glycinis [FOSR]
20170
20244
+
Val
GAC
[ENA]
¡û
>W1710573399
FOXL01000005
Gammaproteobacteria
Frateuria terrea [FOXL]
395435
395361
-
Val
GAC
[ENA]
¡û
>W1710575657
FOZI01000002
Gammaproteobacteria
Dyella sp. OK004 [FOZI]
746050
745976
-
Val
GAC
[ENA]
¡û
>W1710579676
FPIS01000002
Gammaproteobacteria
Luteibacter sp. UNCMF366Tsu5.1 [FPIS]
822561
822635
+
Val
GAC
[ENA]
¡û
>W1710592232
FRCH01000003
Gammaproteobacteria
Rhodanobacter sp. OK091 [FRCH]
232404
232478
+
Val
GAC
[ENA]
¡û
>W1710603043
FUYT01000004
Gammaproteobacteria
Luteibacter sp. 22Crub2.1 [FUYT]
183846
183920
+
Val
GAC
[ENA]
¡û
>W1710742125
LGRQ01000140
Gammaproteobacteria
Luteibacter rhizovicinus [LGRQ]
6414
6488
+
Val
GAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK