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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Groundwater metagenome 4000601.lucy.pga.C1
Anticodon = GAT
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.273513 (57 seq.)
>W1710863202
LMEX01000002
Gammaproteobacteria
Rhodanobacter sp. Root480 [LMEX]
1334967
1335043
+
Ile
GAT
[ENA]
¡û
>W1710864986
LMGH01000016
Gammaproteobacteria
Rhodanobacter sp. Root561 [LMGH]
278881
278957
+
Ile
GAT
[ENA]
¡û
>W1710865688
LMGW01000002
Gammaproteobacteria
Rhodanobacter sp. Root627 [LMGW]
1287281
1287357
+
Ile
GAT
[ENA]
¡û
>W1710880574
LMSK01000002
Gammaproteobacteria
Rhodanobacter sp. Soil772 [LMSK]
1178309
1178385
+
Ile
GAT
[ENA]
¡û
>W1711147373
LVJP01003384
Gammaproteobacteria
Rhodanobacter denitrificans [LVJP]
1498
1574
+
Ile
GAT
[ENA]
¡û
>W1711147416
LVJQ01000097
Gammaproteobacteria
Rhodanobacter sp. FW104-R5 [LVJQ]
276
352
+
Ile
GAT
[ENA]
¡û
>W1711147418
LVJQ01000141
Gammaproteobacteria
Rhodanobacter sp. FW104-R5 [LVJQ]
343
267
-
Ile
GAT
[ENA]
¡û
>W1711147508
LVJR01000068
Gammaproteobacteria
Rhodanobacter sp. FW104-R8 [LVJR]
3756
3680
-
Ile
GAT
[ENA]
¡û
>W1711147549
LVJS01000094
Gammaproteobacteria
Rhodanobacter thiooxydans [LVJS]
3504
3428
-
Ile
GAT
[ENA]
¡û
>W1711147576
LVJT01000056
Gammaproteobacteria
Rhodanobacter sp. FW510-T8 [LVJT]
1911
1987
+
Ile
GAT
[ENA]
¡û
>W1711147630
LVJU01000063
Gammaproteobacteria
Rhodanobacter sp. FW510-R10 [LVJU]
3787
3711
-
Ile
GAT
[ENA]
¡û
>W1711147664
LVJV01000790
Gammaproteobacteria
Rhodanobacter sp. FW510-R12 [LVJV]
304
228
-
Ile
GAT
[ENA]
¡û
>W1711147666
LVJV01000795
Gammaproteobacteria
Rhodanobacter sp. FW510-R12 [LVJV]
305
229
-
Ile
GAT
[ENA]
¡û
>W1711751319
MUNQ01000021
Gammaproteobacteria
Rhodanobacter sp. C05 [MUNQ]
1987
2063
+
Ile
GAT
[ENA]
¡û
>W1711751330
MUNR01000001
Gammaproteobacteria
Rhodanobacter sp. C01 [MUNR]
3639
3563
-
Ile
GAT
[ENA]
¡û
>W1711751461
MUNT01000015
Gammaproteobacteria
Rhodanobacter sp. C03 [MUNT]
1919
1995
+
Ile
GAT
[ENA]
¡û
>W1711751463
MUNU01000002
Gammaproteobacteria
Rhodanobacter sp. B05 [MUNU]
2024
2100
+
Ile
GAT
[ENA]
¡û
>W131218935
ATYD01000004
Gammaproteobacteria
Rhodanobacter sp. OR444 [ATYD]
3744
3668
-
Ile
GAT
[ENA]
¡û
>W131219059
ATYF01000026
Gammaproteobacteria
Rhodanobacter sp. OR92 [ATYF]
1981
2057
+
Ile
GAT
[ENA]
¡û
>WENV180099492
NMRC01008514
[NMRC] plant metagenome; fluid collected inside the plant's pitcher
2026
2102
+
Ile
GAT
[ENA]
¢þ
>WENV180263289
OBEQ011463001
[OBEQ] groundwater metagenome; groundwater
261
337
+
Ile
GAT
[ENA]
¢þ
>W141151894
AXBJ01000008
Gammaproteobacteria
Rhodanobacter sp. OR87 [AXBJ]
156319
156395
+
Ile
GAT
[ENA]
¡û
>W141151901
AXBJ01000019
Gammaproteobacteria
Rhodanobacter sp. OR87 [AXBJ]
3689
3613
-
Ile
GAT
[ENA]
¡û
>W141151906
AXBJ01000026
Gammaproteobacteria
Rhodanobacter sp. OR87 [AXBJ]
2030
2106
+
Ile
GAT
[ENA]
¡û
>W141151913
AXBJ01000036
Gammaproteobacteria
Rhodanobacter sp. OR87 [AXBJ]
24072
23996
-
Ile
GAT
[ENA]
¡û
>WENV183736479
PJUC01006167
[PJUC] soil metagenome; Soil enriched on filter paper
748
824
+
Ile
GAT
[ENA]
¢þ
>WENV170556581
CXWL01010801
[CXWL] groundwater metagenome; biofilm material
1318
1394
+
Ile
GAT
[ENA]
¢þ
>WENV170705410
LNAO01000205
[LNAO] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
8658
8582
-
Ile
GAT
[ENA]
¢þ
>WENV170707842
LNAP01036356
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
1499
1423
-
Ile
GAT
[ENA]
¢þ
>W1910821960
MWIO01000080
Gammaproteobacteria
Rhodanobacter lindaniclasticus DSM 17932 [MWIO]
2000
2076
+
Ile
GAT
[ENA]
¡û
>W1910841613
NADW01000020
Bacillota
Bacillus sp. SRB_336 [NADW]
3601
3525
-
Ile
GAT
[ENA]
¡û
>W1810071346
PEER01000003
Gammaproteobacteria
Rhodanobacter sp. TND4EH1 [PEER]
3615
3539
-
Ile
GAT
[ENA]
¡û
>W1810514406
QBUW01000022
Gammaproteobacteria
Rhodanobacter thiooxydans CR1 [QBUW]
1777
1853
+
Ile
GAT
[ENA]
¡û
>W1810591953
QFWQ01000014
Gammaproteobacteria
Rhodanobacter denitrificans Yn1 [QFWQ]
1905
1981
+
Ile
GAT
[ENA]
¡û
>ENV09004050
ADIG01001062
Groundwater metagenome 4000601.lucy.pga.C1
60803
60727
-
Ile
GAT
[ENA]
¡û
>W11180869
AGIL01000002
Gammaproteobacteria
Rhodanobacter denitrificans 2APBS1 [AGIL]
435085
435161
+
Ile
GAT
[ENA]
¡û
>W11181126
AGIS01000011
Alphaproteobacteria
Hyphomicrobium denitrificans 1NES1 [AGIS]
3686
3610
-
Ile
GAT
[ENA]
¡û
>W121071269
AJXT01000061
Gammaproteobacteria
Rhodanobacter spathiphylli B39 [AJXT]
3612
3536
-
Ile
GAT
[ENA]
¡û
>W121071290
AJXU01000048
Gammaproteobacteria
Rhodanobacter fulvus Jip2 [AJXU]
1918
1994
+
Ile
GAT
[ENA]
¡û
>W121071356
AJXV01000059
Gammaproteobacteria
Rhodanobacter denitrificans 116-2 [AJXV]
2028
2104
+
Ile
GAT
[ENA]
¡û
>W121071407
AJXW01000099
Gammaproteobacteria
Rhodanobacter thiooxydans LCS2 [AJXW]
2039
2115
+
Ile
GAT
[ENA]
¡û
>C131003694
CP003470
Gammaproteobacteria
Rhodanobacter denitrificans 2APBS1 [CP003470]
436546
436622
+
Ile
GAT
-
¡û
>C131003718
CP003470
Gammaproteobacteria
Rhodanobacter denitrificans 2APBS1 [CP003470]
4088788
4088712
-
Ile
GAT
-
¡û
>W1610725548
LMEX01000002
Gammaproteobacteria
Rhodanobacter sp. Root480 [LMEX]
1334967
1335043
+
Ile
GAT
[ENA]
¡û
>W1610727332
LMGH01000016
Gammaproteobacteria
Rhodanobacter sp. Root561 [LMGH]
278881
278957
+
Ile
GAT
[ENA]
¡û
>W1610728034
LMGW01000002
Gammaproteobacteria
Rhodanobacter sp. Root627 [LMGW]
1287281
1287357
+
Ile
GAT
[ENA]
¡û
>W1610742920
LMSK01000002
Gammaproteobacteria
Rhodanobacter sp. Soil772 [LMSK]
1178309
1178385
+
Ile
GAT
[ENA]
¡û
>W1610958326
LVJP01003384
Gammaproteobacteria
Rhodanobacter denitrificans [LVJP]
1498
1574
+
Ile
GAT
[ENA]
¡û
>W1610958369
LVJQ01000097
Gammaproteobacteria
Rhodanobacter sp. FW104-R5 [LVJQ]
276
352
+
Ile
GAT
[ENA]
¡û
>W1610958371
LVJQ01000141
Gammaproteobacteria
Rhodanobacter sp. FW104-R5 [LVJQ]
343
267
-
Ile
GAT
[ENA]
¡û
>W1610958461
LVJR01000068
Gammaproteobacteria
Rhodanobacter sp. FW104-R8 [LVJR]
3756
3680
-
Ile
GAT
[ENA]
¡û
>W1610958502
LVJS01000094
Gammaproteobacteria
Rhodanobacter thiooxydans [LVJS]
3504
3428
-
Ile
GAT
[ENA]
¡û
>W1610958529
LVJT01000056
Gammaproteobacteria
Rhodanobacter sp. FW510-T8 [LVJT]
1911
1987
+
Ile
GAT
[ENA]
¡û
>W1610958583
LVJU01000063
Gammaproteobacteria
Rhodanobacter sp. FW510-R10 [LVJU]
3787
3711
-
Ile
GAT
[ENA]
¡û
>W1610958617
LVJV01000790
Gammaproteobacteria
Rhodanobacter sp. FW510-R12 [LVJV]
304
228
-
Ile
GAT
[ENA]
¡û
>W1610958619
LVJV01000795
Gammaproteobacteria
Rhodanobacter sp. FW510-R12 [LVJV]
305
229
-
Ile
GAT
[ENA]
¡û
>W1710592236
FRCH01000009
Gammaproteobacteria
Rhodanobacter sp. OK091 [FRCH]
2011
2087
+
Ile
GAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK