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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Groundwater metagenome 4000601.lucy.pga.C1
Anticodon = GCA
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.780151 (21 seq.)
>W1710864958
LMGH01000010
Gammaproteobacteria
Rhodanobacter sp. Root561 [LMGH]
209478
209551
+
Cys
GCA
[ENA]
¡û
>W1710866708
LMHR01000087
Gammaproteobacteria
Rhodanobacter sp. Root179 [LMHR]
145
218
+
Cys
GCA
[ENA]
¡û
>W1710880564
LMSK01000001
Gammaproteobacteria
Rhodanobacter sp. Soil772 [LMSK]
752858
752785
-
Cys
GCA
[ENA]
¡û
>W1711386235
MEFB01000005
Gammaproteobacteria
Rhodanobacter sp. SCN 67-45 [MEFB]
54911
54984
+
Cys
GCA
[ENA]
¡û
>W1711387236
MEGL01000002
Gammaproteobacteria
Rhodanobacter sp. SCN 68-63 [MEGL]
78204
78277
+
Cys
GCA
[ENA]
¡û
>W1711503674
MKTU01000051
Gammaproteobacteria
Rhodanobacter sp. 67-28 [MKTU]
13783
13710
-
Cys
GCA
[ENA]
¡û
>W1711506080
MKWC01000004
Gammaproteobacteria
Rhodanobacter sp. 68-29 [MKWC]
496318
496391
+
Cys
GCA
[ENA]
¡û
>W1711751365
MUNR01000012
Gammaproteobacteria
Rhodanobacter sp. C01 [MUNR]
269192
269119
-
Cys
GCA
[ENA]
¡û
>W1711751490
MUNU01000014
Gammaproteobacteria
Rhodanobacter sp. B05 [MUNU]
90064
89991
-
Cys
GCA
[ENA]
¡û
>WENV181308159
OFIS01000354
[OFIS] sludge metagenome; sludge
7120
7047
-
Cys
GCA
[ENA]
¢þ
>WENV181401362
OFTX01000040
[OFTX] sludge metagenome; sludge
76445
76518
+
Cys
GCA
[ENA]
¢þ
>WENV181402562
OFTY01004259
[OFTY] sludge metagenome; sludge
2713
2640
-
Cys
GCA
[ENA]
¢þ
>WENV183736581
PJUC01015429
[PJUC] soil metagenome; Soil enriched on filter paper
606
533
-
Cys
GCA
[ENA]
¢þ
>WENV170706405
LNAP01002870
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
13375
13302
-
Cys
GCA
[ENA]
¢þ
>W1910821921
MWIO01000008
Gammaproteobacteria
Rhodanobacter lindaniclasticus DSM 17932 [MWIO]
60894
60821
-
Cys
GCA
[ENA]
¡û
>W1810071359
PEER01000009
Gammaproteobacteria
Rhodanobacter sp. TND4EH1 [PEER]
643926
643999
+
Cys
GCA
[ENA]
¡û
>ENV09004033
ADIG01001046
Groundwater metagenome 4000601.lucy.pga.C1
344820
344893
+
Cys
GCA
[ENA]
¡û
>W121071261
AJXT01000042
Gammaproteobacteria
Rhodanobacter spathiphylli B39 [AJXT]
43878
43805
-
Cys
GCA
[ENA]
¡û
>W1610727304
LMGH01000010
Gammaproteobacteria
Rhodanobacter sp. Root561 [LMGH]
209478
209551
+
Cys
GCA
[ENA]
¡û
>W1610729054
LMHR01000087
Gammaproteobacteria
Rhodanobacter sp. Root179 [LMHR]
145
218
+
Cys
GCA
[ENA]
¡û
>W1610742910
LMSK01000001
Gammaproteobacteria
Rhodanobacter sp. Soil772 [LMSK]
752858
752785
-
Cys
GCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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