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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Groundwater metagenome 4000601.lucy.pga.C1
Anticodon = GGA
HIT:
2 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.13467 (10 seq.)
>W1711147378
LVJP01003492
Gammaproteobacteria
Rhodanobacter denitrificans [LVJP]
1
93
+
Ser
GGA
[ENA]
¡û
>W131218962
ATYD01000198
Gammaproteobacteria
Rhodanobacter sp. OR444 [ATYD]
5066
5158
+
Ser
GGA
[ENA]
¡û
>W131219056
ATYF01000018
Gammaproteobacteria
Rhodanobacter sp. OR92 [ATYF]
54989
55081
+
Ser
GGA
[ENA]
¡û
>W141151904
AXBJ01000024
Gammaproteobacteria
Rhodanobacter sp. OR87 [AXBJ]
60971
61063
+
Ser
GGA
[ENA]
¡û
>ENV09004057
ADIG01001682
Groundwater metagenome 4000601.lucy.pga.C1
692
600
-
Ser
GGA
[ENA]
¡û
>W1510018825
BBUM02000050
Gammaproteobacteria
Mizugakiibacter sediminis skMP5 [BBUM]
52919
52827
-
Ser
GGA
[ENA]
¡û
>W11180872
AGIL01000003
Gammaproteobacteria
Rhodanobacter denitrificans 2APBS1 [AGIL]
371552
371644
+
Ser
GGA
[ENA]
¡û
>W121071352
AJXV01000050
Gammaproteobacteria
Rhodanobacter denitrificans 116-2 [AJXV]
180129
180221
+
Ser
GGA
[ENA]
¡û
>C131003704
CP003470
Gammaproteobacteria
Rhodanobacter denitrificans 2APBS1 [CP003470]
1565016
1565108
+
Ser
GGA
-
¡û
>W1610958331
LVJP01003492
Gammaproteobacteria
Rhodanobacter denitrificans [LVJP]
1
93
+
Ser
GGA
[ENA]
¡û
Identical group No.13537 (3 seq.)
>W141564952
JIBD01000016
Gammaproteobacteria
Dyella japonica UNC79MFTsu3.2 [JIBD]
537663
537571
-
Ser
GGA
[ENA]
¡û
>ENV09004030
ADIG01001046
Groundwater metagenome 4000601.lucy.pga.C1
277460
277552
+
Ser
GGA
[ENA]
¡û
>W1710560310
FONH01000001
Gammaproteobacteria
Dyella marensis [FONH]
537519
537427
-
Ser
GGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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