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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Groundwater metagenome 4000601.lucy.pga.C1
Anticodon = GTG
HIT:
2 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.273507 (43 seq.)
>W1710863176
LMEX01000001
Gammaproteobacteria
Rhodanobacter sp. Root480 [LMEX]
523310
523386
+
His
GTG
[ENA]
¡û
>W1710864954
LMGH01000010
Gammaproteobacteria
Rhodanobacter sp. Root561 [LMGH]
76302
76378
+
His
GTG
[ENA]
¡û
>W1710865663
LMGW01000001
Gammaproteobacteria
Rhodanobacter sp. Root627 [LMGW]
553414
553490
+
His
GTG
[ENA]
¡û
>W1710866704
LMHR01000085
Gammaproteobacteria
Rhodanobacter sp. Root179 [LMHR]
112166
112242
+
His
GTG
[ENA]
¡û
>W1710880546
LMSK01000001
Gammaproteobacteria
Rhodanobacter sp. Soil772 [LMSK]
494224
494300
+
His
GTG
[ENA]
¡û
>W1711147395
LVJP01003696
Gammaproteobacteria
Rhodanobacter denitrificans [LVJP]
11781
11857
+
His
GTG
[ENA]
¡û
>W1711147469
LVJQ01003019
Gammaproteobacteria
Rhodanobacter sp. FW104-R5 [LVJQ]
167
243
+
His
GTG
[ENA]
¡û
>W1711147471
LVJQ01003024
Gammaproteobacteria
Rhodanobacter sp. FW104-R5 [LVJQ]
138
62
-
His
GTG
[ENA]
¡û
>W1711147489
LVJR01000021
Gammaproteobacteria
Rhodanobacter sp. FW104-R8 [LVJR]
55120
55044
-
His
GTG
[ENA]
¡û
>W1711147538
LVJS01000052
Gammaproteobacteria
Rhodanobacter thiooxydans [LVJS]
55450
55526
+
His
GTG
[ENA]
¡û
>W1711147591
LVJT01000088
Gammaproteobacteria
Rhodanobacter sp. FW510-T8 [LVJT]
7422
7346
-
His
GTG
[ENA]
¡û
>W1711147610
LVJU01000005
Gammaproteobacteria
Rhodanobacter sp. FW510-R10 [LVJU]
44181
44257
+
His
GTG
[ENA]
¡û
>W1711386226
MEFB01000003
Gammaproteobacteria
Rhodanobacter sp. SCN 67-45 [MEFB]
103678
103602
-
His
GTG
[ENA]
¡û
>W1711503658
MKTU01000036
Gammaproteobacteria
Rhodanobacter sp. 67-28 [MKTU]
76249
76173
-
His
GTG
[ENA]
¡û
>W1711751468
MUNU01000003
Gammaproteobacteria
Rhodanobacter sp. B05 [MUNU]
87160
87236
+
His
GTG
[ENA]
¡û
>W1711751537
MUNV01000018
Gammaproteobacteria
Rhodanobacter sp. B04 [MUNV]
46039
46115
+
His
GTG
[ENA]
¡û
>W131218968
ATYD01000217
Gammaproteobacteria
Rhodanobacter sp. OR444 [ATYD]
745
821
+
His
GTG
[ENA]
¡û
>W131219017
ATYF01000001
Gammaproteobacteria
Rhodanobacter sp. OR92 [ATYF]
220687
220763
+
His
GTG
[ENA]
¡û
>W141151875
AXBJ01000003
Gammaproteobacteria
Rhodanobacter sp. OR87 [AXBJ]
231935
232011
+
His
GTG
[ENA]
¡û
>WENV170705499
LNAO01001092
[LNAO] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
481
405
-
His
GTG
[ENA]
¢þ
>WENV170706009
LNAP01000839
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
8299
8375
+
His
GTG
[ENA]
¢þ
>W1910821943
MWIO01000032
Gammaproteobacteria
Rhodanobacter lindaniclasticus DSM 17932 [MWIO]
62996
63072
+
His
GTG
[ENA]
¡û
>W1810514397
QBUW01000016
Gammaproteobacteria
Rhodanobacter thiooxydans CR1 [QBUW]
13994
13918
-
His
GTG
[ENA]
¡û
>W1810591924
QFWQ01000003
Gammaproteobacteria
Rhodanobacter denitrificans Yn1 [QFWQ]
285002
284926
-
His
GTG
[ENA]
¡û
>ENV09004017
ADIG01001044
Groundwater metagenome 4000601.lucy.pga.C1
164634
164710
+
His
GTG
[ENA]
¡û
>W11180890
AGIL01000007
Gammaproteobacteria
Rhodanobacter denitrificans 2APBS1 [AGIL]
79523
79599
+
His
GTG
[ENA]
¡û
>W121071265
AJXT01000043
Gammaproteobacteria
Rhodanobacter spathiphylli B39 [AJXT]
81151
81075
-
His
GTG
[ENA]
¡û
>W121071306
AJXU01000075
Gammaproteobacteria
Rhodanobacter fulvus Jip2 [AJXU]
53701
53625
-
His
GTG
[ENA]
¡û
>W121071339
AJXV01000030
Gammaproteobacteria
Rhodanobacter denitrificans 116-2 [AJXV]
8056
8132
+
His
GTG
[ENA]
¡û
>W121071374
AJXW01000020
Gammaproteobacteria
Rhodanobacter thiooxydans LCS2 [AJXW]
104449
104525
+
His
GTG
[ENA]
¡û
>C131003730
CP003470
Gammaproteobacteria
Rhodanobacter denitrificans 2APBS1 [CP003470]
2435695
2435619
-
His
GTG
-
¡û
>W1610725522
LMEX01000001
Gammaproteobacteria
Rhodanobacter sp. Root480 [LMEX]
523310
523386
+
His
GTG
[ENA]
¡û
>W1610727300
LMGH01000010
Gammaproteobacteria
Rhodanobacter sp. Root561 [LMGH]
76302
76378
+
His
GTG
[ENA]
¡û
>W1610728009
LMGW01000001
Gammaproteobacteria
Rhodanobacter sp. Root627 [LMGW]
553414
553490
+
His
GTG
[ENA]
¡û
>W1610729050
LMHR01000085
Gammaproteobacteria
Rhodanobacter sp. Root179 [LMHR]
112166
112242
+
His
GTG
[ENA]
¡û
>W1610742892
LMSK01000001
Gammaproteobacteria
Rhodanobacter sp. Soil772 [LMSK]
494224
494300
+
His
GTG
[ENA]
¡û
>W1610958348
LVJP01003696
Gammaproteobacteria
Rhodanobacter denitrificans [LVJP]
11781
11857
+
His
GTG
[ENA]
¡û
>W1610958422
LVJQ01003019
Gammaproteobacteria
Rhodanobacter sp. FW104-R5 [LVJQ]
167
243
+
His
GTG
[ENA]
¡û
>W1610958424
LVJQ01003024
Gammaproteobacteria
Rhodanobacter sp. FW104-R5 [LVJQ]
138
62
-
His
GTG
[ENA]
¡û
>W1610958442
LVJR01000021
Gammaproteobacteria
Rhodanobacter sp. FW104-R8 [LVJR]
55120
55044
-
His
GTG
[ENA]
¡û
>W1610958491
LVJS01000052
Gammaproteobacteria
Rhodanobacter thiooxydans [LVJS]
55450
55526
+
His
GTG
[ENA]
¡û
>W1610958544
LVJT01000088
Gammaproteobacteria
Rhodanobacter sp. FW510-T8 [LVJT]
7422
7346
-
His
GTG
[ENA]
¡û
>W1610958563
LVJU01000005
Gammaproteobacteria
Rhodanobacter sp. FW510-R10 [LVJU]
44181
44257
+
His
GTG
[ENA]
¡û
Identical group No.575238 (1 seq.)
>ENV09004080
ADIG01005873
Groundwater metagenome 4000601.lucy.pga.C1
762
837
+
His
GTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK