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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Groundwater metagenome 4000601.lucy.pga.C1
Anticodon = TAA
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.112751 (23 seq.)
>W1710864961
LMGH01000010
Gammaproteobacteria
Rhodanobacter sp. Root561 [LMGH]
212587
212501
-
Leu
TAA
[ENA]
¡û
>W1710866709
LMHR01000087
Gammaproteobacteria
Rhodanobacter sp. Root179 [LMHR]
3253
3167
-
Leu
TAA
[ENA]
¡û
>W1711147415
LVJP01003931
Gammaproteobacteria
Rhodanobacter denitrificans [LVJP]
154
68
-
Leu
TAA
[ENA]
¡û
>W1711147428
LVJQ01001347
Gammaproteobacteria
Rhodanobacter sp. FW104-R5 [LVJQ]
1224
1310
+
Leu
TAA
[ENA]
¡û
>W1711147513
LVJR01000100
Gammaproteobacteria
Rhodanobacter sp. FW104-R8 [LVJR]
1047
961
-
Leu
TAA
[ENA]
¡û
>W1711147585
LVJT01000078
Gammaproteobacteria
Rhodanobacter sp. FW510-T8 [LVJT]
19330
19416
+
Leu
TAA
[ENA]
¡û
>W1711147639
LVJU01000093
Gammaproteobacteria
Rhodanobacter sp. FW510-R10 [LVJU]
19324
19410
+
Leu
TAA
[ENA]
¡û
>W1711147652
LVJV01000112
Gammaproteobacteria
Rhodanobacter sp. FW510-R12 [LVJV]
1494
1580
+
Leu
TAA
[ENA]
¡û
>W1711147653
LVJV01000128
Gammaproteobacteria
Rhodanobacter sp. FW510-R12 [LVJV]
1453
1537
+
Leu
TAA
[ENA]
¡û
>W131218957
ATYD01000148
Gammaproteobacteria
Rhodanobacter sp. OR444 [ATYD]
8972
8888
-
Leu
TAA
[ENA]
¡û
>W141151865
AXBJ01000001
Gammaproteobacteria
Rhodanobacter sp. OR87 [AXBJ]
195606
195692
+
Leu
TAA
[ENA]
¡û
>W1810591938
QFWQ01000005
Gammaproteobacteria
Rhodanobacter denitrificans Yn1 [QFWQ]
390752
390666
-
Leu
TAA
[ENA]
¡û
>ENV09004061
ADIG01002472
Groundwater metagenome 4000601.lucy.pga.C1
666
582
-
Leu
TAA
[ENA]
¡û
>W121071257
AJXT01000042
Gammaproteobacteria
Rhodanobacter spathiphylli B39 [AJXT]
40772
40858
+
Leu
TAA
[ENA]
¡û
>W1610727307
LMGH01000010
Gammaproteobacteria
Rhodanobacter sp. Root561 [LMGH]
212587
212501
-
Leu
TAA
[ENA]
¡û
>W1610729055
LMHR01000087
Gammaproteobacteria
Rhodanobacter sp. Root179 [LMHR]
3253
3167
-
Leu
TAA
[ENA]
¡û
>W1610958368
LVJP01003931
Gammaproteobacteria
Rhodanobacter denitrificans [LVJP]
154
68
-
Leu
TAA
[ENA]
¡û
>W1610958381
LVJQ01001347
Gammaproteobacteria
Rhodanobacter sp. FW104-R5 [LVJQ]
1224
1310
+
Leu
TAA
[ENA]
¡û
>W1610958466
LVJR01000100
Gammaproteobacteria
Rhodanobacter sp. FW104-R8 [LVJR]
1047
961
-
Leu
TAA
[ENA]
¡û
>W1610958538
LVJT01000078
Gammaproteobacteria
Rhodanobacter sp. FW510-T8 [LVJT]
19330
19416
+
Leu
TAA
[ENA]
¡û
>W1610958592
LVJU01000093
Gammaproteobacteria
Rhodanobacter sp. FW510-R10 [LVJU]
19324
19410
+
Leu
TAA
[ENA]
¡û
>W1610958605
LVJV01000112
Gammaproteobacteria
Rhodanobacter sp. FW510-R12 [LVJV]
1494
1580
+
Leu
TAA
[ENA]
¡û
>W1610958606
LVJV01000128
Gammaproteobacteria
Rhodanobacter sp. FW510-R12 [LVJV]
1453
1537
+
Leu
TAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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