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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Groundwater metagenome 4000601.lucy.pga.C1
Anticodon = TAC
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.654992 (55 seq.)
>W1710863179
LMEX01000001
Gammaproteobacteria
Rhodanobacter sp. Root480 [LMEX]
530598
530672
+
Val
TAC
[ENA]
¡û
>W1710864967
LMGH01000011
Gammaproteobacteria
Rhodanobacter sp. Root561 [LMGH]
409814
409888
+
Val
TAC
[ENA]
¡û
>W1710865666
LMGW01000001
Gammaproteobacteria
Rhodanobacter sp. Root627 [LMGW]
560703
560777
+
Val
TAC
[ENA]
¡û
>W1710866714
LMHR01000088
Gammaproteobacteria
Rhodanobacter sp. Root179 [LMHR]
309745
309819
+
Val
TAC
[ENA]
¡û
>W1710880549
LMSK01000001
Gammaproteobacteria
Rhodanobacter sp. Soil772 [LMSK]
501487
501561
+
Val
TAC
[ENA]
¡û
>W1711147379
LVJP01003511
Gammaproteobacteria
Rhodanobacter denitrificans [LVJP]
153
79
-
Val
TAC
[ENA]
¡û
>W1711147451
LVJQ01002391
Gammaproteobacteria
Rhodanobacter sp. FW104-R5 [LVJQ]
97
23
-
Val
TAC
[ENA]
¡û
>W1711147541
LVJS01000052
Gammaproteobacteria
Rhodanobacter thiooxydans [LVJS]
62678
62752
+
Val
TAC
[ENA]
¡û
>W1711386229
MEFB01000003
Gammaproteobacteria
Rhodanobacter sp. SCN 67-45 [MEFB]
47531
47457
-
Val
TAC
[ENA]
¡û
>W1711503661
MKTU01000036
Gammaproteobacteria
Rhodanobacter sp. 67-28 [MKTU]
69024
68950
-
Val
TAC
[ENA]
¡û
>W1711751327
MUNQ01000022
Gammaproteobacteria
Rhodanobacter sp. C05 [MUNQ]
6556
6482
-
Val
TAC
[ENA]
¡û
>W1711751440
MUNT01000006
Gammaproteobacteria
Rhodanobacter sp. C03 [MUNT]
92502
92576
+
Val
TAC
[ENA]
¡û
>W1711751471
MUNU01000003
Gammaproteobacteria
Rhodanobacter sp. B05 [MUNU]
94485
94559
+
Val
TAC
[ENA]
¡û
>W1711751540
MUNV01000018
Gammaproteobacteria
Rhodanobacter sp. B04 [MUNV]
53417
53491
+
Val
TAC
[ENA]
¡û
>W131218971
ATYD01000217
Gammaproteobacteria
Rhodanobacter sp. OR444 [ATYD]
17293
17367
+
Val
TAC
[ENA]
¡û
>W131219020
ATYF01000001
Gammaproteobacteria
Rhodanobacter sp. OR92 [ATYF]
276138
276212
+
Val
TAC
[ENA]
¡û
>WENV180099556
NMRC01017083
[NMRC] plant metagenome; fluid collected inside the plant's pitcher
2417
2343
-
Val
TAC
[ENA]
¢þ
>WENV181401608
OFTX01001431
[OFTX] sludge metagenome; sludge
995
921
-
Val
TAC
[ENA]
¢þ
>W141151878
AXBJ01000003
Gammaproteobacteria
Rhodanobacter sp. OR87 [AXBJ]
239183
239257
+
Val
TAC
[ENA]
¡û
>WENV182555502
OJDB01000009
[OJDB] seawater metagenome; Sea water
7070
7144
+
Val
TAC
[ENA]
¢þ
>WENV182555639
OJDC01010578
[OJDC] seawater metagenome; Sea water
469
543
+
Val
TAC
[ENA]
¢þ
>WENV182559369
OJDP01000204
[OJDP] seawater metagenome; Sea water
1356
1282
-
Val
TAC
[ENA]
¢þ
>WENV182560142
OJDT01000638
[OJDT] seawater metagenome; Sea water
241
167
-
Val
TAC
[ENA]
¢þ
>WENV182568259
OJES01005607
[OJES] seawater metagenome; Sea water
179
105
-
Val
TAC
[ENA]
¢þ
>WENV182572821
OJFM01020771
[OJFM] seawater metagenome; Sea water
448
522
+
Val
TAC
[ENA]
¢þ
>WENV182572992
OJFO01014655
[OJFO] seawater metagenome; Sea water
451
525
+
Val
TAC
[ENA]
¢þ
>WENV182577395
OJGE01000015
[OJGE] seawater metagenome; Sea water
7048
7122
+
Val
TAC
[ENA]
¢þ
>WENV182577529
OJGG01001084
[OJGG] seawater metagenome; Sea water
214
140
-
Val
TAC
[ENA]
¢þ
>WENV182589143
OJHZ01000038
[OJHZ] seawater metagenome; Sea water
2183
2109
-
Val
TAC
[ENA]
¢þ
>WENV182593267
OJIT01018317
[OJIT] seawater metagenome; Sea water
440
514
+
Val
TAC
[ENA]
¢þ
>WENV183058271
OLHP01000199
[OLHP] seawater metagenome; Sea water
2024
1950
-
Val
TAC
[ENA]
¢þ
>WENV183058353
OLHQ01000643
[OLHQ] seawater metagenome; Sea water
3237
3311
+
Val
TAC
[ENA]
¢þ
>WENV170706012
LNAP01000839
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
15569
15643
+
Val
TAC
[ENA]
¢þ
>W1910821946
MWIO01000032
Gammaproteobacteria
Rhodanobacter lindaniclasticus DSM 17932 [MWIO]
70230
70304
+
Val
TAC
[ENA]
¡û
>W1910841574
NADW01000002
Bacillota
Bacillus sp. SRB_336 [NADW]
1155278
1155204
-
Val
TAC
[ENA]
¡û
>W1810071367
PEER01000009
Gammaproteobacteria
Rhodanobacter sp. TND4EH1 [PEER]
968884
968810
-
Val
TAC
[ENA]
¡û
>W1810514400
QBUW01000016
Gammaproteobacteria
Rhodanobacter thiooxydans CR1 [QBUW]
6737
6663
-
Val
TAC
[ENA]
¡û
>ENV09004020
ADIG01001044
Groundwater metagenome 4000601.lucy.pga.C1
171875
171949
+
Val
TAC
[ENA]
¡û
>W11180893
AGIL01000007
Gammaproteobacteria
Rhodanobacter denitrificans 2APBS1 [AGIL]
86771
86845
+
Val
TAC
[ENA]
¡û
>W121071220
AJXS01000394
Gammaproteobacteria
Rhodanobacter sp. 115 [AJXS]
4815
4741
-
Val
TAC
[ENA]
¡û
>W121071231
AJXT01000004
Gammaproteobacteria
Rhodanobacter spathiphylli B39 [AJXT]
534166
534240
+
Val
TAC
[ENA]
¡û
>W121071309
AJXU01000075
Gammaproteobacteria
Rhodanobacter fulvus Jip2 [AJXU]
46411
46337
-
Val
TAC
[ENA]
¡û
>W121071342
AJXV01000030
Gammaproteobacteria
Rhodanobacter denitrificans 116-2 [AJXV]
15304
15378
+
Val
TAC
[ENA]
¡û
>W121071377
AJXW01000020
Gammaproteobacteria
Rhodanobacter thiooxydans LCS2 [AJXW]
111677
111751
+
Val
TAC
[ENA]
¡û
>C131003733
CP003470
Gammaproteobacteria
Rhodanobacter denitrificans 2APBS1 [CP003470]
2428447
2428373
-
Val
TAC
-
¡û
>W1610725525
LMEX01000001
Gammaproteobacteria
Rhodanobacter sp. Root480 [LMEX]
530598
530672
+
Val
TAC
[ENA]
¡û
>W1610727313
LMGH01000011
Gammaproteobacteria
Rhodanobacter sp. Root561 [LMGH]
409814
409888
+
Val
TAC
[ENA]
¡û
>W1610728012
LMGW01000001
Gammaproteobacteria
Rhodanobacter sp. Root627 [LMGW]
560703
560777
+
Val
TAC
[ENA]
¡û
>W1610729060
LMHR01000088
Gammaproteobacteria
Rhodanobacter sp. Root179 [LMHR]
309745
309819
+
Val
TAC
[ENA]
¡û
>W1610742895
LMSK01000001
Gammaproteobacteria
Rhodanobacter sp. Soil772 [LMSK]
501487
501561
+
Val
TAC
[ENA]
¡û
>W1610958332
LVJP01003511
Gammaproteobacteria
Rhodanobacter denitrificans [LVJP]
153
79
-
Val
TAC
[ENA]
¡û
>W1610958404
LVJQ01002391
Gammaproteobacteria
Rhodanobacter sp. FW104-R5 [LVJQ]
97
23
-
Val
TAC
[ENA]
¡û
>W1610958494
LVJS01000052
Gammaproteobacteria
Rhodanobacter thiooxydans [LVJS]
62678
62752
+
Val
TAC
[ENA]
¡û
>W1710567370
FOSR01000015
Gammaproteobacteria
Rhodanobacter glycinis [FOSR]
67896
67822
-
Val
TAC
[ENA]
¡û
>W1710592216
FRCH01000001
Gammaproteobacteria
Rhodanobacter sp. OK091 [FRCH]
59826
59752
-
Val
TAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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