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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Groundwater metagenome 4000601.lucy.pga.C1
Anticodon = TGG
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.299305 (32 seq.)
>W1710880544
LMSK01000001
Gammaproteobacteria
Rhodanobacter sp. Soil772 [LMSK]
494031
494107
+
Pro
TGG
[ENA]
¡û
>W1711147393
LVJP01003696
Gammaproteobacteria
Rhodanobacter denitrificans [LVJP]
11589
11665
+
Pro
TGG
[ENA]
¡û
>W1711147487
LVJR01000021
Gammaproteobacteria
Rhodanobacter sp. FW104-R8 [LVJR]
55311
55235
-
Pro
TGG
[ENA]
¡û
>W1711147536
LVJS01000052
Gammaproteobacteria
Rhodanobacter thiooxydans [LVJS]
55257
55333
+
Pro
TGG
[ENA]
¡û
>W1711147589
LVJT01000088
Gammaproteobacteria
Rhodanobacter sp. FW510-T8 [LVJT]
7613
7537
-
Pro
TGG
[ENA]
¡û
>W1711147608
LVJU01000005
Gammaproteobacteria
Rhodanobacter sp. FW510-R10 [LVJU]
43990
44066
+
Pro
TGG
[ENA]
¡û
>W1711147668
LVJV01000853
Gammaproteobacteria
Rhodanobacter sp. FW510-R12 [LVJV]
243
167
-
Pro
TGG
[ENA]
¡û
>W1711147670
LVJV01000854
Gammaproteobacteria
Rhodanobacter sp. FW510-R12 [LVJV]
241
165
-
Pro
TGG
[ENA]
¡û
>W1711386224
MEFB01000003
Gammaproteobacteria
Rhodanobacter sp. SCN 67-45 [MEFB]
103870
103794
-
Pro
TGG
[ENA]
¡û
>W1711503656
MKTU01000036
Gammaproteobacteria
Rhodanobacter sp. 67-28 [MKTU]
76441
76365
-
Pro
TGG
[ENA]
¡û
>W131218966
ATYD01000217
Gammaproteobacteria
Rhodanobacter sp. OR444 [ATYD]
552
628
+
Pro
TGG
[ENA]
¡û
>W131219015
ATYF01000001
Gammaproteobacteria
Rhodanobacter sp. OR92 [ATYF]
220495
220571
+
Pro
TGG
[ENA]
¡û
>WENV181401801
OFTX01007288
[OFTX] sludge metagenome; sludge
1136
1060
-
Pro
TGG
[ENA]
¢þ
>W141151873
AXBJ01000003
Gammaproteobacteria
Rhodanobacter sp. OR87 [AXBJ]
231743
231819
+
Pro
TGG
[ENA]
¡û
>WENV170705497
LNAO01001092
[LNAO] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
674
598
-
Pro
TGG
[ENA]
¢þ
>WENV170706007
LNAP01000839
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
8106
8182
+
Pro
TGG
[ENA]
¢þ
>W1910821941
MWIO01000032
Gammaproteobacteria
Rhodanobacter lindaniclasticus DSM 17932 [MWIO]
62804
62880
+
Pro
TGG
[ENA]
¡û
>W1810514395
QBUW01000016
Gammaproteobacteria
Rhodanobacter thiooxydans CR1 [QBUW]
14187
14111
-
Pro
TGG
[ENA]
¡û
>W1810591922
QFWQ01000003
Gammaproteobacteria
Rhodanobacter denitrificans Yn1 [QFWQ]
285193
285117
-
Pro
TGG
[ENA]
¡û
>ENV09004015
ADIG01001044
Groundwater metagenome 4000601.lucy.pga.C1
164442
164518
+
Pro
TGG
[ENA]
¡û
>W11180888
AGIL01000007
Gammaproteobacteria
Rhodanobacter denitrificans 2APBS1 [AGIL]
79331
79407
+
Pro
TGG
[ENA]
¡û
>W121071337
AJXV01000030
Gammaproteobacteria
Rhodanobacter denitrificans 116-2 [AJXV]
7864
7940
+
Pro
TGG
[ENA]
¡û
>W121071372
AJXW01000020
Gammaproteobacteria
Rhodanobacter thiooxydans LCS2 [AJXW]
104256
104332
+
Pro
TGG
[ENA]
¡û
>C131003728
CP003470
Gammaproteobacteria
Rhodanobacter denitrificans 2APBS1 [CP003470]
2435887
2435811
-
Pro
TGG
-
¡û
>W1610742890
LMSK01000001
Gammaproteobacteria
Rhodanobacter sp. Soil772 [LMSK]
494031
494107
+
Pro
TGG
[ENA]
¡û
>W1610958346
LVJP01003696
Gammaproteobacteria
Rhodanobacter denitrificans [LVJP]
11589
11665
+
Pro
TGG
[ENA]
¡û
>W1610958440
LVJR01000021
Gammaproteobacteria
Rhodanobacter sp. FW104-R8 [LVJR]
55311
55235
-
Pro
TGG
[ENA]
¡û
>W1610958489
LVJS01000052
Gammaproteobacteria
Rhodanobacter thiooxydans [LVJS]
55257
55333
+
Pro
TGG
[ENA]
¡û
>W1610958542
LVJT01000088
Gammaproteobacteria
Rhodanobacter sp. FW510-T8 [LVJT]
7613
7537
-
Pro
TGG
[ENA]
¡û
>W1610958561
LVJU01000005
Gammaproteobacteria
Rhodanobacter sp. FW510-R10 [LVJU]
43990
44066
+
Pro
TGG
[ENA]
¡û
>W1610958621
LVJV01000853
Gammaproteobacteria
Rhodanobacter sp. FW510-R12 [LVJV]
243
167
-
Pro
TGG
[ENA]
¡û
>W1610958623
LVJV01000854
Gammaproteobacteria
Rhodanobacter sp. FW510-R12 [LVJV]
241
165
-
Pro
TGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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