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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Groundwater metagenome 4000601.lucy.pga.C1
Anticodon = TGT
HIT:
2 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.492396 (12 seq.)
>W1711147690
LVJV01001386
Gammaproteobacteria
Rhodanobacter sp. FW510-R12 [LVJV]
488
413
-
Thr
TGT
[ENA]
¡û
>W131218943
ATYD01000036
Gammaproteobacteria
Rhodanobacter sp. OR444 [ATYD]
25777
25702
-
Thr
TGT
[ENA]
¡û
>W1711751333
MUNR01000005
Gammaproteobacteria
Rhodanobacter sp. C01 [MUNR]
170306
170381
+
Thr
TGT
[ENA]
¡û
>W1711751456
MUNT01000007
Gammaproteobacteria
Rhodanobacter sp. C03 [MUNT]
74209
74284
+
Thr
TGT
[ENA]
¡û
>WENV180018107
FSYG01000496
[FSYG] metagenome; soil
4022
4097
+
Thr
TGT
[ENA]
¢þ
>WENV180018109
FSYG01000604
[FSYG] metagenome; soil
4148
4223
+
Thr
TGT
[ENA]
¢þ
>WENV180099524
NMRC01012678
[NMRC] plant metagenome; fluid collected inside the plant's pitcher
297
223
-
Thr
TGT
[ENA]
¢þ
>W1910841602
NADW01000014
Bacillota
Bacillus sp. SRB_336 [NADW]
286745
286670
-
Thr
TGT
[ENA]
¡û
>W1810591950
QFWQ01000009
Gammaproteobacteria
Rhodanobacter denitrificans Yn1 [QFWQ]
106500
106575
+
Thr
TGT
[ENA]
¡û
>ENV09004008
ADIG01000286
Groundwater metagenome 4000601.lucy.pga.C1
1265
1340
+
Thr
TGT
[ENA]
¡û
>W1610958643
LVJV01001386
Gammaproteobacteria
Rhodanobacter sp. FW510-R12 [LVJV]
488
413
-
Thr
TGT
[ENA]
¡û
>W1710592235
FRCH01000005
Gammaproteobacteria
Rhodanobacter sp. OK091 [FRCH]
79292
79217
-
Thr
TGT
[ENA]
¡û
Identical group No.528637 (11 seq.)
>W1710863206
LMEX01000002
Gammaproteobacteria
Rhodanobacter sp. Root480 [LMEX]
310202
310127
-
Thr
TGT
[ENA]
¡û
>W1710865692
LMGW01000002
Gammaproteobacteria
Rhodanobacter sp. Root627 [LMGW]
352822
352747
-
Thr
TGT
[ENA]
¡û
>W1710880587
LMSK01000005
Gammaproteobacteria
Rhodanobacter sp. Soil772 [LMSK]
137035
137110
+
Thr
TGT
[ENA]
¡û
>W1711751501
MUNU01000017
Gammaproteobacteria
Rhodanobacter sp. B05 [MUNU]
292104
292179
+
Thr
TGT
[ENA]
¡û
>WENV170706275
LNAP01001813
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
21781
21706
-
Thr
TGT
[ENA]
¢þ
>W1810071392
PEER01000015
Gammaproteobacteria
Rhodanobacter sp. TND4EH1 [PEER]
58848
58923
+
Thr
TGT
[ENA]
¡û
>ENV09004046
ADIG01001060
Groundwater metagenome 4000601.lucy.pga.C1
565795
565720
-
Thr
TGT
[ENA]
¡û
>W121071277
AJXU01000021
Gammaproteobacteria
Rhodanobacter fulvus Jip2 [AJXU]
6671
6596
-
Thr
TGT
[ENA]
¡û
>W1610725552
LMEX01000002
Gammaproteobacteria
Rhodanobacter sp. Root480 [LMEX]
310202
310127
-
Thr
TGT
[ENA]
¡û
>W1610728038
LMGW01000002
Gammaproteobacteria
Rhodanobacter sp. Root627 [LMGW]
352822
352747
-
Thr
TGT
[ENA]
¡û
>W1610742933
LMSK01000005
Gammaproteobacteria
Rhodanobacter sp. Soil772 [LMSK]
137035
137110
+
Thr
TGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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