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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Gut microbiome of Human (healthy human sample F1-U, Infant, Feale)
Anticodon = TCG
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.308833 (7 seq.)
>WENV180124227
OASX01004074
[OASX] human gut metagenome; faeces
3686
3610
-
Arg
TCG
[ENA]
¢þ
>WENV180129352
OATC01001526
[OATC] human gut metagenome; faeces
116
192
+
Arg
TCG
[ENA]
¢þ
>WENV180444518
OBWZ01028366
[OBWZ] human gut metagenome; faeces
147
71
-
Arg
TCG
[ENA]
¢þ
>WENV180504967
OCAO01000317
[OCAO] human gut metagenome; faeces
17031
17107
+
Arg
TCG
[ENA]
¢þ
>WENV182601909
OJJJ01001505
[OJJJ] metagenome; faeces
2037
1961
-
Arg
TCG
[ENA]
¢þ
>WENV182617489
OJKD01016542
[OJKD] metagenome; faeces
238
314
+
Arg
TCG
[ENA]
¢þ
>WENV082923
BAAW01012387
Gut microbiome of Human (healthy human sample F1-U, Infant, Feale)
703
625
-
Arg
TCG
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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