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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Gut microbiome of Human (healthy human sample In-B, Infant, Male)
Anticodon = CGC
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.466741 (23 seq.)
>WENV180153089
OAUR01000640
[OAUR] human gut metagenome; faeces
684
757
+
Ala
CGC
[ENA]
¢þ
>WENV180155007
OAUU01002012
[OAUU] human gut metagenome; faeces
714
787
+
Ala
CGC
[ENA]
¢þ
>WENV180160459
OAVC01000912
[OAVC] human gut metagenome; faeces
10363
10436
+
Ala
CGC
[ENA]
¢þ
>WENV180563197
OCLC01004203
[OCLC] human gut metagenome; human gut
597
670
+
Ala
CGC
[ENA]
¢þ
>WENV180838583
ODKG01137085
[ODKG] human metagenome; G_DNA_Stool
251
324
+
Ala
CGC
[ENA]
¢þ
>WENV181681237
OGOT01006264
[OGOT] human gut metagenome; faeces
2437
2364
-
Ala
CGC
[ENA]
¢þ
>WENV181774296
OGRE01010824
[OGRE] human gut metagenome; faeces
471
544
+
Ala
CGC
[ENA]
¢þ
>WENV181775694
OGRF01014522
[OGRF] human gut metagenome; faeces
2139
2066
-
Ala
CGC
[ENA]
¢þ
>WENV181919639
OGYI01001676
[OGYI] human gut metagenome; faeces
15353
15426
+
Ala
CGC
[ENA]
¢þ
>WENV182401065
OIER01000234
[OIER] human gut metagenome; human gut
41556
41629
+
Ala
CGC
[ENA]
¢þ
>WENV182403241
OIET01001711
[OIET] human gut metagenome; human gut
476
549
+
Ala
CGC
[ENA]
¢þ
>WENV182403917
OIEU01000678
[OIEU] human gut metagenome; human gut
8693
8766
+
Ala
CGC
[ENA]
¢þ
>WENV182405190
OIEV01001272
[OIEV] human gut metagenome; human gut
526
599
+
Ala
CGC
[ENA]
¢þ
>WENV182946865
OKVL01000163
[OKVL] human gut metagenome; human gut
10441
10368
-
Ala
CGC
[ENA]
¢þ
>WENV182954340
OKWA01000454
[OKWA] human gut metagenome; human gut
17426
17499
+
Ala
CGC
[ENA]
¢þ
>WENV183102338
OLNI01000319
[OLNI] human gut metagenome; faeces
3710
3783
+
Ala
CGC
[ENA]
¢þ
>WENV183189283
OLPQ01001231
[OLPQ] human gut metagenome; faeces
3403
3330
-
Ala
CGC
[ENA]
¢þ
>WENV183196174
OLPU01000223
[OLPU] human gut metagenome; faeces
10135
10062
-
Ala
CGC
[ENA]
¢þ
>W1810160753
PJDV01000021
Actinomycetota
Bifidobacterium longum APC1480 [PJDV]
57025
57098
+
Ala
CGC
[ENA]
¡û
>W1810160920
PJDY01000042
Actinomycetota
Bifidobacterium longum APC1476 [PJDY]
4995
4922
-
Ala
CGC
[ENA]
¡û
>W1810161140
PJEC01000041
Actinomycetota
Bifidobacterium longum APC1466 [PJEC]
54561
54634
+
Ala
CGC
[ENA]
¡û
>W1810161205
PJED01000044
Actinomycetota
Bifidobacterium longum APC1465 [PJED]
8144
8071
-
Ala
CGC
[ENA]
¡û
>WENV085241
BABC01000017
Gut microbiome of Human (healthy human sample In-B, Infant, Male)
194
117
-
Ala
CGC
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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