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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Gut microbiome of Human (healthy human sample In-M, Infant, Female)
Anticodon = AAG
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.116258 (49 seq.)
>W131002425
AGYU01000024
Bacillota
Hungatella hathewayi 12489931 [AGYU]
112705
112790
+
Leu
AAG
[ENA]
¡û
>W131238348
BAHR02000231
Bacillota
Hungatella hathewayi VE202-04 [BAHR]
26836
26751
-
Leu
AAG
[ENA]
¡û
>WENV180140753
OATU01000526
[OATU] human gut metagenome; faeces
24309
24394
+
Leu
AAG
[ENA]
¢þ
>WENV180148798
OAUK01003067
[OAUK] human gut metagenome; faeces
1992
1907
-
Leu
AAG
[ENA]
¢þ
>WENV180165398
OAVK01001175
[OAVK] human gut metagenome; faeces
1
84
+
Leu
AAG
[ENA]
¢þ
>WENV180411819
OBUZ01001104
[OBUZ] human gut metagenome; faeces
3763
3848
+
Leu
AAG
[ENA]
¢þ
>WENV180414109
OBVC01001303
[OBVC] human gut metagenome; faeces
1095
1010
-
Leu
AAG
[ENA]
¢þ
>WENV180418472
OBVJ01039136
[OBVJ] human gut metagenome; faeces
85
170
+
Leu
AAG
[ENA]
¢þ
>WENV180431134
OBWG01003728
[OBWG] human gut metagenome; faeces
2608
2693
+
Leu
AAG
[ENA]
¢þ
>WENV180446801
OBXC01001376
[OBXC] human gut metagenome; faeces
9544
9629
+
Leu
AAG
[ENA]
¢þ
>WENV180452286
OBXJ01002724
[OBXJ] human gut metagenome; faeces
469
384
-
Leu
AAG
[ENA]
¢þ
>WENV180453650
OBXM01000385
[OBXM] human gut metagenome; faeces
21297
21382
+
Leu
AAG
[ENA]
¢þ
>WENV180461075
OBXZ01007474
[OBXZ] human gut metagenome; faeces
1145
1060
-
Leu
AAG
[ENA]
¢þ
>WENV180497375
OCAE01001461
[OCAE] human gut metagenome; faeces
8347
8432
+
Leu
AAG
[ENA]
¢þ
>WENV180506354
OCAS01000373
[OCAS] human gut metagenome; faeces
31354
31269
-
Leu
AAG
[ENA]
¢þ
>WENV180839617
ODKI01030410
[ODKI] human metagenome; G_DNA_Stool
195
110
-
Leu
AAG
[ENA]
¢þ
>WENV181343338
OFMJ01001153
[OFMJ] human gut metagenome; human gut
15122
15207
+
Leu
AAG
[ENA]
¢þ
>WENV181488876
OGFR01001192
[OGFR] metagenome; Human gut stool
71
155
+
Leu
AAG
[ENA]
¢þ
>WENV181558147
OGIW01011575
[OGIW] metagenome; Human gut stool
433
348
-
Leu
AAG
[ENA]
¢þ
>WENV181600111
OGLD01000179
[OGLD] metagenome; Human gut stool
3615
3700
+
Leu
AAG
[ENA]
¢þ
>WENV181834364
OGUR01000136
[OGUR] metagenome; Human gut stool
24303
24388
+
Leu
AAG
[ENA]
¢þ
>WENV182003360
OHBC01008890
[OHBC] human gut metagenome; feces
495
580
+
Leu
AAG
[ENA]
¢þ
>WENV182118142
OHJF01009642
[OHJF] human gut metagenome; feces
585
670
+
Leu
AAG
[ENA]
¢þ
>WENV182209884
OHQA01005106
[OHQA] human gut metagenome; feces
416
331
-
Leu
AAG
[ENA]
¢þ
>W141224333
BAHY01000109
Bacillota
Hungatella hathewayi VE202-11 [BAHY]
15353
15438
+
Leu
AAG
[ENA]
¡û
>WENV182401897
OIES01000011
[OIES] human gut metagenome; human gut
60334
60249
-
Leu
AAG
[ENA]
¢þ
>WENV182440495
OIJZ01006826
[OIJZ] human gut metagenome; human gut
499
584
+
Leu
AAG
[ENA]
¢þ
>WENV182613033
OJJZ01000087
[OJJZ] metagenome; faeces
26751
26667
-
Leu
AAG
[ENA]
¢þ
>WENV182613079
OJJZ01000403
[OJJZ] metagenome; faeces
9825
9740
-
Leu
AAG
[ENA]
¢þ
>WENV182621862
OJKJ01001602
[OJKJ] metagenome; faeces
4614
4529
-
Leu
AAG
[ENA]
¢þ
>WENV182621864
OJKJ01001612
[OJKJ] metagenome; faeces
2949
2865
-
Leu
AAG
[ENA]
¢þ
>WENV182937783
OKVD01000003
[OKVD] human gut metagenome; human gut
86155
86070
-
Leu
AAG
[ENA]
¢þ
>WENV182949941
OKVR01000001
[OKVR] human gut metagenome; human gut
337984
338069
+
Leu
AAG
[ENA]
¢þ
>WENV182951621
OKVV01000001
[OKVV] human gut metagenome; human gut
337928
338013
+
Leu
AAG
[ENA]
¢þ
>WENV182952259
OKVW01000012
[OKVW] human gut metagenome; human gut
135606
135691
+
Leu
AAG
[ENA]
¢þ
>WENV183764907
PPYE01322505
[PPYE] human gut metagenome; stool from patient with ulcerative colitis
2326
2411
+
Leu
AAG
[ENA]
¢þ
>W1810659605
QJKD01000029
Bacillota
Hungatella effluvii DSM 24995 [QJKD]
21645
21560
-
Leu
AAG
[ENA]
¡û
>W1810802670
QRQF01000001
Bacillota
Hungatella hathewayi AF33-11 [QRQF]
43834
43919
+
Leu
AAG
[ENA]
¡û
>W1810825008
QSHY01000006
Bacillota
Hungatella hathewayi AM35-8 [QSHY]
230709
230794
+
Leu
AAG
[ENA]
¡û
>W1810831722
QSON01000002
Bacillota
Hungatella hathewayi TM09-12 [QSON]
57635
57550
-
Leu
AAG
[ENA]
¡û
>W1810835453
QSRE01000017
Bacillota
Hungatella hathewayi TF09-11AC [QSRE]
57641
57556
-
Leu
AAG
[ENA]
¡û
>W1810837568
QSSQ01000001
Bacillota
Hungatella hathewayi TF05-11AC [QSSQ]
555054
554969
-
Leu
AAG
[ENA]
¡û
>W1810842119
QSVU01000001
Bacillota
Hungatella hathewayi OM02-1 [QSVU]
43808
43893
+
Leu
AAG
[ENA]
¡û
>W1810858617
QTJW01000045
Bacillota
Hungatella hathewayi AF19-13AC [QTJW]
6151
6066
-
Leu
AAG
[ENA]
¡û
>W1610058207
BBZQ01000067
Bacillota
Clostridia bacterium UC5.1-1F8 [BBZQ]
6031
5946
-
Leu
AAG
[ENA]
¡û
>W1610100575
CYZE01000001
Bacillota
Hungatella hathewayi [CYZE]
808578
808493
-
Leu
AAG
[ENA]
¡û
>WENV086356
BABF01000935
Gut microbiome of Human (healthy human sample In-M, Infant, Female)
5519
5431
-
Leu
AAG
[ENA]
>W1710054966
BBZQ01000067
Bacillota
Clostridia bacterium UC5.1-1F8 [BBZQ]
6031
5946
-
Leu
AAG
[ENA]
¡û
>W1710103330
CYZE01000001
Bacillota
Hungatella hathewayi [CYZE]
808578
808493
-
Leu
AAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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