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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Gut microbiome of Human (healthy human sample In-M, Infant, Female)
Anticodon = CGC
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.473840 (63 seq.)
>W131002443
AGYU01000025
Bacillota
Hungatella hathewayi 12489931 [AGYU]
679606
679533
-
Ala
CGC
[ENA]
¡û
>W131238319
BAHR02000160
Bacillota
Hungatella hathewayi VE202-04 [BAHR]
6206
6279
+
Ala
CGC
[ENA]
¡û
>WENV180126450
OASZ01007665
[OASZ] human gut metagenome; faeces
131
58
-
Ala
CGC
[ENA]
¢þ
>WENV180140788
OATU01000652
[OATU] human gut metagenome; faeces
5925
5998
+
Ala
CGC
[ENA]
¢þ
>WENV180148661
OAUK01001269
[OAUK] human gut metagenome; faeces
6917
6844
-
Ala
CGC
[ENA]
¢þ
>WENV180165415
OAVK01001269
[OAVK] human gut metagenome; faeces
5964
6037
+
Ala
CGC
[ENA]
¢þ
>WENV180182474
OAWO01046928
[OAWO] human gut metagenome; faeces
156
83
-
Ala
CGC
[ENA]
¢þ
>WENV180314683
OBKG01026827
[OBKG] human gut metagenome; human gut
67
140
+
Ala
CGC
[ENA]
¢þ
>WENV180411853
OBUZ01001649
[OBUZ] human gut metagenome; faeces
6248
6321
+
Ala
CGC
[ENA]
¢þ
>WENV180414075
OBVC01000792
[OBVC] human gut metagenome; faeces
10383
10310
-
Ala
CGC
[ENA]
¢þ
>WENV180426407
OBVY01045984
[OBVY] human gut metagenome; faeces
83
10
-
Ala
CGC
[ENA]
¢þ
>WENV180430931
OBWG01000739
[OBWG] human gut metagenome; faeces
6213
6286
+
Ala
CGC
[ENA]
¢þ
>WENV180440911
OBWV01006358
[OBWV] human gut metagenome; faeces
607
680
+
Ala
CGC
[ENA]
¢þ
>WENV180445836
OBXA01030870
[OBXA] human gut metagenome; faeces
636
563
-
Ala
CGC
[ENA]
¢þ
>WENV180446621
OBXC01000412
[OBXC] human gut metagenome; faeces
29431
29358
-
Ala
CGC
[ENA]
¢þ
>WENV180452250
OBXJ01001118
[OBXJ] human gut metagenome; faeces
1395
1468
+
Ala
CGC
[ENA]
¢þ
>WENV180453619
OBXM01000339
[OBXM] human gut metagenome; faeces
47411
47338
-
Ala
CGC
[ENA]
¢þ
>WENV180461037
OBXZ01005073
[OBXZ] human gut metagenome; faeces
2457
2384
-
Ala
CGC
[ENA]
¢þ
>WENV180490511
OBZU01002103
[OBZU] human gut metagenome; faeces
1227
1300
+
Ala
CGC
[ENA]
¢þ
>WENV180491407
OBZV01002288
[OBZV] human gut metagenome; faeces
3801
3728
-
Ala
CGC
[ENA]
¢þ
>WENV180497185
OCAE01000375
[OCAE] human gut metagenome; faeces
24089
24016
-
Ala
CGC
[ENA]
¢þ
>WENV180506456
OCAS01000681
[OCAS] human gut metagenome; faeces
2054
2127
+
Ala
CGC
[ENA]
¢þ
>WENV181343236
OFMJ01000833
[OFMJ] human gut metagenome; human gut
5967
6040
+
Ala
CGC
[ENA]
¢þ
>WENV181429942
OGCY01011830
[OGCY] metagenome; Human gut stool
155
228
+
Ala
CGC
[ENA]
¢þ
>WENV181488882
OGFR01001298
[OGFR] metagenome; Human gut stool
6228
6301
+
Ala
CGC
[ENA]
¢þ
>WENV181494808
OGGB01010935
[OGGB] metagenome; Human gut stool
707
780
+
Ala
CGC
[ENA]
¢þ
>WENV181533640
OGHR01007900
[OGHR] metagenome; Human gut stool
1296
1369
+
Ala
CGC
[ENA]
¢þ
>WENV181558146
OGIW01009534
[OGIW] metagenome; Human gut stool
778
705
-
Ala
CGC
[ENA]
¢þ
>WENV181574074
OGJS01003718
[OGJS] metagenome; Human gut stool
3912
3985
+
Ala
CGC
[ENA]
¢þ
>WENV181600127
OGLD01000251
[OGLD] metagenome; Human gut stool
5874
5947
+
Ala
CGC
[ENA]
¢þ
>WENV181834326
OGUR01000093
[OGUR] metagenome; Human gut stool
6262
6335
+
Ala
CGC
[ENA]
¢þ
>WENV181861515
OGWR01053607
[OGWR] human gut metagenome; faeces
730
657
-
Ala
CGC
[ENA]
¢þ
>WENV181897041
OGXS01017999
[OGXS] human gut metagenome; faeces
920
993
+
Ala
CGC
[ENA]
¢þ
>WENV181965649
OGZT01002029
[OGZT] human gut metagenome; faeces
6102
6029
-
Ala
CGC
[ENA]
¢þ
>WENV181976527
OHAD01001579
[OHAD] human gut metagenome; faeces
20006
20079
+
Ala
CGC
[ENA]
¢þ
>WENV182003284
OHBC01001029
[OHBC] human gut metagenome; feces
2118
2045
-
Ala
CGC
[ENA]
¢þ
>WENV182118004
OHJF01000584
[OHJF] human gut metagenome; feces
9715
9642
-
Ala
CGC
[ENA]
¢þ
>WENV182209806
OHQA01000890
[OHQA] human gut metagenome; feces
5800
5873
+
Ala
CGC
[ENA]
¢þ
>WENV182238167
OHRY01001977
[OHRY] human gut metagenome; feces
2354
2427
+
Ala
CGC
[ENA]
¢þ
>W141224337
BAHY01000126
Bacillota
Hungatella hathewayi VE202-11 [BAHY]
6195
6268
+
Ala
CGC
[ENA]
¡û
>WENV182600133
OJJF01016617
[OJJF] metagenome; faeces
100
27
-
Ala
CGC
[ENA]
¢þ
>WENV182613027
OJJZ01000070
[OJJZ] metagenome; faeces
24774
24701
-
Ala
CGC
[ENA]
¢þ
>WENV182621599
OJKJ01000158
[OJKJ] metagenome; faeces
5237
5310
+
Ala
CGC
[ENA]
¢þ
>WENV182937855
OKVD01000027
[OKVD] human gut metagenome; human gut
128828
128901
+
Ala
CGC
[ENA]
¢þ
>WENV182950008
OKVR01000018
[OKVR] human gut metagenome; human gut
128823
128896
+
Ala
CGC
[ENA]
¢þ
>WENV182951740
OKVV01000061
[OKVV] human gut metagenome; human gut
52785
52858
+
Ala
CGC
[ENA]
¢þ
>WENV183290808
OLSH01004039
[OLSH] human gut metagenome; faeces
468
395
-
Ala
CGC
[ENA]
¢þ
>WENV183752272
PPYE01033352
[PPYE] human gut metagenome; stool from patient with ulcerative colitis
11
84
+
Ala
CGC
[ENA]
¢þ
>WENV183760787
PPYE01237670
[PPYE] human gut metagenome; stool from patient with ulcerative colitis
1071
1144
+
Ala
CGC
[ENA]
¢þ
>WENV183764544
PPYE01319986
[PPYE] human gut metagenome; stool from patient with ulcerative colitis
31947
31874
-
Ala
CGC
[ENA]
¢þ
>WENV170028241
CDYE01005580
[CDYE] gut metagenome; human stools
16720
16647
-
Ala
CGC
[ENA]
¢þ
>W1810802681
QRQF01000006
Bacillota
Hungatella hathewayi AF33-11 [QRQF]
301144
301071
-
Ala
CGC
[ENA]
¡û
>W1810825049
QSHY01000042
Bacillota
Hungatella hathewayi AM35-8 [QSHY]
6263
6336
+
Ala
CGC
[ENA]
¡û
>W1810831772
QSON01000029
Bacillota
Hungatella hathewayi TM09-12 [QSON]
60258
60185
-
Ala
CGC
[ENA]
¡û
>W1810835472
QSRE01000032
Bacillota
Hungatella hathewayi TF09-11AC [QSRE]
6378
6451
+
Ala
CGC
[ENA]
¡û
>W1810837571
QSSQ01000003
Bacillota
Hungatella hathewayi TF05-11AC [QSSQ]
344
417
+
Ala
CGC
[ENA]
¡û
>W1810842172
QSVU01000032
Bacillota
Hungatella hathewayi OM02-1 [QSVU]
6295
6368
+
Ala
CGC
[ENA]
¡û
>W1810858613
QTJW01000034
Bacillota
Hungatella hathewayi AF19-13AC [QTJW]
51755
51682
-
Ala
CGC
[ENA]
¡û
>W1610058208
BBZQ01000071
Bacillota
Clostridia bacterium UC5.1-1F8 [BBZQ]
9546
9473
-
Ala
CGC
[ENA]
¡û
>W1610100578
CYZE01000002
Bacillota
Hungatella hathewayi [CYZE]
6234
6307
+
Ala
CGC
[ENA]
¡û
>WENV086384
BABF01001434
Gut microbiome of Human (healthy human sample In-M, Infant, Female)
274
349
+
Ala
CGC
[ENA]
>W1710054967
BBZQ01000071
Bacillota
Clostridia bacterium UC5.1-1F8 [BBZQ]
9546
9473
-
Ala
CGC
[ENA]
¡û
>W1710103333
CYZE01000002
Bacillota
Hungatella hathewayi [CYZE]
6234
6307
+
Ala
CGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK