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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Gut microbiome of Human (healthy human sample In-R, Adult, Female)
Anticodon = TAT
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.473097 (44 seq.)
>WENV180196494
OBAA01000574
[OBAA] human gut metagenome; faeces
17100
17028
-
Ile
TAT
[ENA]
¢þ
>WENV180293046
OBIX01000244
[OBIX] human gut metagenome; human gut
12073
12001
-
Ile
TAT
[ENA]
¢þ
>WENV180302921
OBJF01007653
[OBJF] human gut metagenome; feces
965
893
-
Ile
TAT
[ENA]
¢þ
>WENV180464674
OBYD01008167
[OBYD] human gut metagenome; faeces
626
698
+
Ile
TAT
[ENA]
¢þ
>WENV180480227
OBZD01000313
[OBZD] human gut metagenome; faeces
17146
17074
-
Ile
TAT
[ENA]
¢þ
>WENV180512910
OCHA01003583
[OCHA] human gut metagenome; human gut
3754
3826
+
Ile
TAT
[ENA]
¢þ
>WENV180603056
OCPR01029063
[OCPR] human gut metagenome; human gut
78
6
-
Ile
TAT
[ENA]
¢þ
>WENV181499276
OGGG01001069
[OGGG] metagenome; Human gut stool
2087
2015
-
Ile
TAT
[ENA]
¢þ
>WENV181566458
OGJI01041261
[OGJI] metagenome; Human gut stool
916
988
+
Ile
TAT
[ENA]
¢þ
>WENV181709927
OGPN01009495
[OGPN] human gut metagenome; faeces
2452
2524
+
Ile
TAT
[ENA]
¢þ
>WENV181767308
OGQZ01030975
[OGQZ] human gut metagenome; faeces
521
593
+
Ile
TAT
[ENA]
¢þ
>WENV181813113
OGTB01022875
[OGTB] human gut metagenome; faeces
594
666
+
Ile
TAT
[ENA]
¢þ
>WENV181823925
OGUJ01031182
[OGUJ] metagenome; Human gut stool
532
460
-
Ile
TAT
[ENA]
¢þ
>WENV181864052
OGWT01032750
[OGWT] human gut metagenome; faeces
77
5
-
Ile
TAT
[ENA]
¢þ
>WENV181867321
OGWV01084709
[OGWV] human gut metagenome; faeces
285
357
+
Ile
TAT
[ENA]
¢þ
>WENV181898770
OGXT01013585
[OGXT] human gut metagenome; faeces
1783
1855
+
Ile
TAT
[ENA]
¢þ
>WENV181962483
OGZP01000145
[OGZP] human gut metagenome; faeces
16636
16708
+
Ile
TAT
[ENA]
¢þ
>WENV182012139
OHBM01009576
[OHBM] human gut metagenome; faeces
3101
3173
+
Ile
TAT
[ENA]
¢þ
>WENV182424021
OIHC01013070
[OIHC] human gut metagenome; human gut
748
820
+
Ile
TAT
[ENA]
¢þ
>WENV182483238
OIRH01015033
[OIRH] human gut metagenome; human gut
126
198
+
Ile
TAT
[ENA]
¢þ
>WENV182486488
OIRS01001352
[OIRS] human gut metagenome; human gut
1848
1920
+
Ile
TAT
[ENA]
¢þ
>WENV182492208
OISQ01000726
[OISQ] human gut metagenome; human gut
6763
6691
-
Ile
TAT
[ENA]
¢þ
>WENV182498193
OITN01001149
[OITN] human gut metagenome; human gut
3887
3815
-
Ile
TAT
[ENA]
¢þ
>WENV182500326
OITY01001136
[OITY] human gut metagenome; human gut
3422
3350
-
Ile
TAT
[ENA]
¢þ
>WENV182500950
OIUA01000982
[OIUA] human gut metagenome; human gut
4962
4890
-
Ile
TAT
[ENA]
¢þ
>WENV182509091
OIVY01001875
[OIVY] human gut metagenome; human gut
726
798
+
Ile
TAT
[ENA]
¢þ
>WENV182657688
OJMK01005968
[OJMK] human gut metagenome; feces
2120
2192
+
Ile
TAT
[ENA]
¢þ
>WENV182876039
OKRX01011080
[OKRX] human gut metagenome; faeces
756
828
+
Ile
TAT
[ENA]
¢þ
>WENV182979452
OKYM01002831
[OKYM] human gut metagenome; human gut
2824
2752
-
Ile
TAT
[ENA]
¢þ
>WENV183008544
OLDL01030365
[OLDL] human gut metagenome; human gut
403
331
-
Ile
TAT
[ENA]
¢þ
>WENV183012308
OLEC01002125
[OLEC] human gut metagenome; human gut
3222
3294
+
Ile
TAT
[ENA]
¢þ
>WENV183013750
OLEH01001006
[OLEH] human gut metagenome; human gut
4354
4426
+
Ile
TAT
[ENA]
¢þ
>WENV183014179
OLEI01000859
[OLEI] human gut metagenome; human gut
2314
2386
+
Ile
TAT
[ENA]
¢þ
>WENV183017763
OLEX01000235
[OLEX] human gut metagenome; human gut
15907
15835
-
Ile
TAT
[ENA]
¢þ
>WENV183019236
OLFB01004312
[OLFB] human gut metagenome; human gut
1805
1733
-
Ile
TAT
[ENA]
¢þ
>WENV183106990
OLNM01000348
[OLNM] human gut metagenome; faeces
27635
27707
+
Ile
TAT
[ENA]
¢þ
>WENV183112484
OLNP01000666
[OLNP] human gut metagenome; faeces
17304
17232
-
Ile
TAT
[ENA]
¢þ
>WENV183160146
OLOU01062825
[OLOU] human gut metagenome; faeces
464
392
-
Ile
TAT
[ENA]
¢þ
>WENV183170732
OLPB01000711
[OLPB] human gut metagenome; faeces
15481
15409
-
Ile
TAT
[ENA]
¢þ
>WENV183194780
OLPT01000386
[OLPT] human gut metagenome; faeces
16899
16971
+
Ile
TAT
[ENA]
¢þ
>WENV183217543
OLQI01000607
[OLQI] human gut metagenome; faeces
14805
14877
+
Ile
TAT
[ENA]
¢þ
>WENV183599885
OODH01017938
[OODH] human gut metagenome; human gut
1295
1223
-
Ile
TAT
[ENA]
¢þ
>WENV183605621
OODM01014546
[OODM] human gut metagenome; human gut
913
841
-
Ile
TAT
[ENA]
¢þ
>WENV086951
BABG01030061
Gut microbiome of Human (healthy human sample In-R, Adult, Female)
636
561
-
Ile
TAT
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK