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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
Gut microbiome of Human (healthy human stool sample 8)
Anticodon = TCG
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.284872 (155 seq.)
>WENV180220875
OBAX01000021
[OBAX] human gut metagenome; human gut
4455
4530
+
Arg
TCG
[ENA]
¢þ
>WENV180223275
OBBG01000202
[OBBG] human gut metagenome; human gut
4432
4507
+
Arg
TCG
[ENA]
¢þ
>WENV180244827
OBDM01000163
[OBDM] human gut metagenome; human gut
8815
8740
-
Arg
TCG
[ENA]
¢þ
>WENV180246502
OBDP01000458
[OBDP] human gut metagenome; human gut
4455
4530
+
Arg
TCG
[ENA]
¢þ
>WENV180277417
OBHX01000074
[OBHX] metagenome; feces
74587
74662
+
Arg
TCG
[ENA]
¢þ
>WENV180285611
OBID01564563
[OBID] metagenome; sludge
201
126
-
Arg
TCG
[ENA]
¢þ
>WENV180286810
OBII01020160
[OBII] human gut metagenome; feces
195
120
-
Arg
TCG
[ENA]
¢þ
>WENV180321287
OBKR01000005
[OBKR] human gut metagenome; feces
194531
194456
-
Arg
TCG
[ENA]
¢þ
>WENV180347565
OBLO01000583
[OBLO] metagenome; feces
5704
5629
-
Arg
TCG
[ENA]
¢þ
>WENV180526313
OCHI01012609
[OCHI] human gut metagenome; human gut
906
981
+
Arg
TCG
[ENA]
¢þ
>WENV180535495
OCHN01000415
[OCHN] human gut metagenome; human gut
40705
40630
-
Arg
TCG
[ENA]
¢þ
>WENV180543857
OCIO01006436
[OCIO] human gut metagenome; human gut
1617
1692
+
Arg
TCG
[ENA]
¢þ
>WENV180544304
OCIP01055133
[OCIP] human gut metagenome; human gut
93
18
-
Arg
TCG
[ENA]
¢þ
>WENV180545335
OCIT01001530
[OCIT] human gut metagenome; human gut
3280
3355
+
Arg
TCG
[ENA]
¢þ
>WENV181089544
OEBA01043119
[OEBA] human metagenome; G_DNA_Stool
253
178
-
Arg
TCG
[ENA]
¢þ
>WENV181334526
OFMC01000009
[OFMC] human gut metagenome; human gut
40290
40215
-
Arg
TCG
[ENA]
¢þ
>WENV181336134
OFMD01000043
[OFMD] human gut metagenome; human gut
54551
54476
-
Arg
TCG
[ENA]
¢þ
>WENV181345257
OFML01000010
[OFML] human gut metagenome; human gut
171533
171608
+
Arg
TCG
[ENA]
¢þ
>WENV181346802
OFMM01000096
[OFMM] human gut metagenome; human gut
55031
54956
-
Arg
TCG
[ENA]
¢þ
>WENV181361825
OFOK01000005
[OFOK] human gut metagenome; human gut
54511
54436
-
Arg
TCG
[ENA]
¢þ
>WENV181671854
OGON01007984
[OGON] human gut metagenome; faeces
1274
1199
-
Arg
TCG
[ENA]
¢þ
>WENV181675055
OGOP01001299
[OGOP] human gut metagenome; faeces
2842
2917
+
Arg
TCG
[ENA]
¢þ
>WENV181690889
OGOZ01000921
[OGOZ] human gut metagenome; faeces
15168
15093
-
Arg
TCG
[ENA]
¢þ
>WENV181714704
OGPR01004370
[OGPR] human gut metagenome; faeces
4705
4630
-
Arg
TCG
[ENA]
¢þ
>WENV181737791
OGQI01000262
[OGQI] human gut metagenome; faeces
40186
40111
-
Arg
TCG
[ENA]
¢þ
>WENV181741070
OGQJ01058177
[OGQJ] human gut metagenome; faeces
410
485
+
Arg
TCG
[ENA]
¢þ
>WENV181754289
OGQR01010192
[OGQR] human gut metagenome; faeces
3286
3211
-
Arg
TCG
[ENA]
¢þ
>WENV181779767
OGRI01019566
[OGRI] human gut metagenome; faeces
1898
1823
-
Arg
TCG
[ENA]
¢þ
>WENV181797497
OGRU01005156
[OGRU] human gut metagenome; faeces
5763
5688
-
Arg
TCG
[ENA]
¢þ
>WENV181871734
OGWZ01000487
[OGWZ] human gut metagenome; faeces
40190
40115
-
Arg
TCG
[ENA]
¢þ
>WENV181885155
OGXJ01007226
[OGXJ] human gut metagenome; faeces
2636
2711
+
Arg
TCG
[ENA]
¢þ
>WENV181893105
OGXQ01000256
[OGXQ] human gut metagenome; faeces
38535
38610
+
Arg
TCG
[ENA]
¢þ
>WENV181909672
OGYC01000454
[OGYC] human gut metagenome; faeces
4486
4561
+
Arg
TCG
[ENA]
¢þ
>WENV181942299
OGYZ01000018
[OGYZ] human gut metagenome; faeces
105940
106015
+
Arg
TCG
[ENA]
¢þ
>WENV181954714
OGZK01000201
[OGZK] human gut metagenome; faeces
54365
54290
-
Arg
TCG
[ENA]
¢þ
>WENV181968372
OGZW01001808
[OGZW] human gut metagenome; faeces
10697
10772
+
Arg
TCG
[ENA]
¢þ
>WENV181998509
OHAV01000060
[OHAV] human gut metagenome; feces
53905
53830
-
Arg
TCG
[ENA]
¢þ
>WENV182004178
OHBD01017328
[OHBD] human gut metagenome; feces
386
461
+
Arg
TCG
[ENA]
¢þ
>WENV182004600
OHBE01000216
[OHBE] human gut metagenome; faeces
4469
4544
+
Arg
TCG
[ENA]
¢þ
>WENV182025531
OHCI01021412
[OHCI] human gut metagenome; feces
12
87
+
Arg
TCG
[ENA]
¢þ
>WENV182049836
OHEC01028137
[OHEC] human gut metagenome; feces
717
792
+
Arg
TCG
[ENA]
¢þ
>WENV182051878
OHEG01015933
[OHEG] human gut metagenome; feces
916
841
-
Arg
TCG
[ENA]
¢þ
>WENV182055645
OHEM01000004
[OHEM] human gut metagenome; feces
63472
63397
-
Arg
TCG
[ENA]
¢þ
>WENV182058220
OHEP01004689
[OHEP] human gut metagenome; feces
1227
1302
+
Arg
TCG
[ENA]
¢þ
>WENV182068474
OHFG01000308
[OHFG] human gut metagenome; feces
40193
40118
-
Arg
TCG
[ENA]
¢þ
>WENV182074277
OHFP01008461
[OHFP] human gut metagenome; feces
1919
1844
-
Arg
TCG
[ENA]
¢þ
>WENV182081907
OHGK01008471
[OHGK] human gut metagenome; feces
1216
1291
+
Arg
TCG
[ENA]
¢þ
>WENV182087824
OHGW01040040
[OHGW] human gut metagenome; feces
129
204
+
Arg
TCG
[ENA]
¢þ
>WENV182088848
OHGZ01000296
[OHGZ] human gut metagenome; feces
2105
2180
+
Arg
TCG
[ENA]
¢þ
>WENV182102093
OHHU01015038
[OHHU] human gut metagenome; feces
387
462
+
Arg
TCG
[ENA]
¢þ
>WENV182123498
OHJP01018955
[OHJP] human gut metagenome; feces
901
976
+
Arg
TCG
[ENA]
¢þ
>WENV182126860
OHJU01001213
[OHJU] human gut metagenome; feces
2487
2412
-
Arg
TCG
[ENA]
¢þ
>WENV182142404
OHKU01002145
[OHKU] human gut metagenome; feces
4457
4532
+
Arg
TCG
[ENA]
¢þ
>WENV182171642
OHMX01007365
[OHMX] human gut metagenome; feces
1857
1782
-
Arg
TCG
[ENA]
¢þ
>WENV182179659
OHNN01002186
[OHNN] human gut metagenome; feces
2176
2251
+
Arg
TCG
[ENA]
¢þ
>WENV182184960
OHOA01013765
[OHOA] human gut metagenome; feces
179
254
+
Arg
TCG
[ENA]
¢þ
>WENV182190380
OHOP01022369
[OHOP] human gut metagenome; feces
89
14
-
Arg
TCG
[ENA]
¢þ
>WENV182192592
OHOZ01022307
[OHOZ] human gut metagenome; feces
361
436
+
Arg
TCG
[ENA]
¢þ
>WENV182193448
OHPB01004498
[OHPB] human gut metagenome; feces
3283
3208
-
Arg
TCG
[ENA]
¢þ
>WENV182202359
OHPO01005689
[OHPO] human gut metagenome; feces
959
884
-
Arg
TCG
[ENA]
¢þ
>WENV182204364
OHPR01000010
[OHPR] human gut metagenome; feces
54031
53956
-
Arg
TCG
[ENA]
¢þ
>WENV182219603
OHQR01003785
[OHQR] human gut metagenome; feces
3575
3500
-
Arg
TCG
[ENA]
¢þ
>WENV182221658
OHQT01003484
[OHQT] human gut metagenome; feces
3548
3473
-
Arg
TCG
[ENA]
¢þ
>WENV182235366
OHRT01000036
[OHRT] human gut metagenome; feces
4484
4559
+
Arg
TCG
[ENA]
¢þ
>WENV182242178
OHSG01019276
[OHSG] human gut metagenome; feces
718
793
+
Arg
TCG
[ENA]
¢þ
>WENV182245156
OHSJ01040511
[OHSJ] human gut metagenome; feces
80
5
-
Arg
TCG
[ENA]
¢þ
>WENV182255784
OHTD01003972
[OHTD] human gut metagenome; feces
6
81
+
Arg
TCG
[ENA]
¢þ
>WENV182257496
OHTF01029623
[OHTF] human gut metagenome; feces
131
206
+
Arg
TCG
[ENA]
¢þ
>WENV182280848
OHUY01017906
[OHUY] human gut metagenome; feces
277
202
-
Arg
TCG
[ENA]
¢þ
>WENV182365168
OICI01011760
[OICI] human gut metagenome; feces
451
376
-
Arg
TCG
[ENA]
¢þ
>WENV182392818
OIEH01000258
[OIEH] human gut metagenome; human gut
29168
29093
-
Arg
TCG
[ENA]
¢þ
>WENV182397810
OIEN01000038
[OIEN] human gut metagenome; human gut
39132
39057
-
Arg
TCG
[ENA]
¢þ
>WENV182633880
OJKY01002792
[OJKY] metagenome; faeces
980
905
-
Arg
TCG
[ENA]
¢þ
>WENV182638620
OJLA01018985
[OJLA] metagenome; faeces
619
544
-
Arg
TCG
[ENA]
¢þ
>WENV182650481
OJMH01000025
[OJMH] human gut metagenome; feces
54514
54439
-
Arg
TCG
[ENA]
¢þ
>WENV182653207
OJMI01000016
[OJMI] human gut metagenome; feces
167412
167487
+
Arg
TCG
[ENA]
¢þ
>WENV182660077
OJMM01000043
[OJMM] human gut metagenome; feces
10372
10297
-
Arg
TCG
[ENA]
¢þ
>WENV182662574
OJMO01000004
[OJMO] human gut metagenome; feces
164476
164551
+
Arg
TCG
[ENA]
¢þ
>WENV182668292
OJNJ01000028
[OJNJ] human gut metagenome; feces
30907
30982
+
Arg
TCG
[ENA]
¢þ
>WENV182681729
OJNV01011205
[OJNV] human gut metagenome; human gut
1197
1272
+
Arg
TCG
[ENA]
¢þ
>WENV182873117
OKRW01000031
[OKRW] human gut metagenome; faeces
64069
63994
-
Arg
TCG
[ENA]
¢þ
>WENV182899593
OKST01000276
[OKST] human gut metagenome; feces
40170
40095
-
Arg
TCG
[ENA]
¢þ
>WENV182943119
OKVH01026485
[OKVH] human gut metagenome; human gut
452
377
-
Arg
TCG
[ENA]
¢þ
>WENV182945295
OKVK01000004
[OKVK] human gut metagenome; human gut
55011
54936
-
Arg
TCG
[ENA]
¢þ
>WENV183040119
OLGB01044784
[OLGB] human gut metagenome; faeces
89
164
+
Arg
TCG
[ENA]
¢þ
>WENV183042795
OLGD01009209
[OLGD] human gut metagenome; faeces
1145
1070
-
Arg
TCG
[ENA]
¢þ
>WENV183071948
OLIT01000026
[OLIT] human gut metagenome; feces
54510
54435
-
Arg
TCG
[ENA]
¢þ
>WENV183075392
OLIW01000014
[OLIW] human gut metagenome; feces
54514
54439
-
Arg
TCG
[ENA]
¢þ
>WENV183077723
OLIX01000001
[OLIX] human gut metagenome; feces
182356
182431
+
Arg
TCG
[ENA]
¢þ
>WENV183082152
OLJA01079545
[OLJA] human gut metagenome; human gut
104
29
-
Arg
TCG
[ENA]
¢þ
>WENV183125258
OLNY01000179
[OLNY] human gut metagenome; faeces
21845
21920
+
Arg
TCG
[ENA]
¢þ
>WENV183131756
OLOB01000011
[OLOB] human gut metagenome; faeces
41205
41130
-
Arg
TCG
[ENA]
¢þ
>WENV183137753
OLOH01000034
[OLOH] human gut metagenome; faeces
57722
57797
+
Arg
TCG
[ENA]
¢þ
>WENV183160280
OLOV01000045
[OLOV] human gut metagenome; faeces
34149
34224
+
Arg
TCG
[ENA]
¢þ
>WENV183164758
OLOX01000908
[OLOX] human gut metagenome; faeces
1715
1790
+
Arg
TCG
[ENA]
¢þ
>WENV183172404
OLPC01009598
[OLPC] human gut metagenome; faeces
2889
2964
+
Arg
TCG
[ENA]
¢þ
>WENV183186380
OLPO01000353
[OLPO] human gut metagenome; faeces
34399
34324
-
Arg
TCG
[ENA]
¢þ
>WENV183198675
OLPV01003462
[OLPV] human gut metagenome; faeces
4490
4565
+
Arg
TCG
[ENA]
¢þ
>WENV183204459
OLPZ01000034
[OLPZ] human gut metagenome; faeces
79727
79802
+
Arg
TCG
[ENA]
¢þ
>WENV183223483
OLQM01025405
[OLQM] human gut metagenome; faeces
624
699
+
Arg
TCG
[ENA]
¢þ
>WENV183251952
OLRI01000297
[OLRI] human gut metagenome; faeces
37649
37574
-
Arg
TCG
[ENA]
¢þ
>WENV183277260
OLSA01000302
[OLSA] human gut metagenome; faeces
40176
40101
-
Arg
TCG
[ENA]
¢þ
>WENV183279117
OLSB01000040
[OLSB] human gut metagenome; faeces
64687
64612
-
Arg
TCG
[ENA]
¢þ
>WENV183283020
OLSD01000059
[OLSD] human gut metagenome; faeces
63033
63108
+
Arg
TCG
[ENA]
¢þ
>WENV183293261
OLSK01000164
[OLSK] human gut metagenome; faeces
54512
54437
-
Arg
TCG
[ENA]
¢þ
>WENV183298479
OLSN01000195
[OLSN] human gut metagenome; faeces
11393
11468
+
Arg
TCG
[ENA]
¢þ
>WENV183305556
OLSX01002033
[OLSX] human gut metagenome; faeces
15615
15540
-
Arg
TCG
[ENA]
¢þ
>WENV183315920
OLVS01001398
[OLVS] human gut metagenome; feces
2657
2732
+
Arg
TCG
[ENA]
¢þ
>WENV183323185
OLVX01021399
[OLVX] human gut metagenome; faeces
342
267
-
Arg
TCG
[ENA]
¢þ
>WENV183329070
OLWB01000006
[OLWB] human gut metagenome; faeces
177346
177421
+
Arg
TCG
[ENA]
¢þ
>WENV183342048
OLWN01001453
[OLWN] human gut metagenome; feces
4941
4866
-
Arg
TCG
[ENA]
¢þ
>WENV183344122
OLWP01022346
[OLWP] human gut metagenome; feces
814
739
-
Arg
TCG
[ENA]
¢þ
>WENV183353856
OLXB01002637
[OLXB] human gut metagenome; feces
3516
3441
-
Arg
TCG
[ENA]
¢þ
>WENV183362233
OLXK01003464
[OLXK] human gut metagenome; feces
1779
1854
+
Arg
TCG
[ENA]
¢þ
>WENV183373706
OLXY01002517
[OLXY] human gut metagenome; feces
3542
3467
-
Arg
TCG
[ENA]
¢þ
>WENV183381376
OLYJ01004879
[OLYJ] human gut metagenome; feces
2071
1996
-
Arg
TCG
[ENA]
¢þ
>WENV183382343
OLYL01000324
[OLYL] human gut metagenome; feces
19790
19715
-
Arg
TCG
[ENA]
¢þ
>WENV183384344
OLYN01002705
[OLYN] human gut metagenome; feces
4397
4472
+
Arg
TCG
[ENA]
¢þ
>WENV183399504
OLZQ01007435
[OLZQ] human gut metagenome; feces
228
303
+
Arg
TCG
[ENA]
¢þ
>WENV183407579
OMAC01001235
[OMAC] human gut metagenome; feces
6337
6262
-
Arg
TCG
[ENA]
¢þ
>WENV183409538
OMAG01001158
[OMAG] human gut metagenome; feces
5790
5715
-
Arg
TCG
[ENA]
¢þ
>WENV183423620
OMBG01004015
[OMBG] human gut metagenome; feces
1155
1080
-
Arg
TCG
[ENA]
¢þ
>WENV183425323
OMBK01005368
[OMBK] human gut metagenome; feces
1232
1307
+
Arg
TCG
[ENA]
¢þ
>WENV183427881
OMBN01000746
[OMBN] human gut metagenome; feces
14298
14223
-
Arg
TCG
[ENA]
¢þ
>WENV183428984
OMBO01000998
[OMBO] human gut metagenome; feces
2799
2874
+
Arg
TCG
[ENA]
¢þ
>WENV183438526
OMCF01000324
[OMCF] human gut metagenome; feces
19790
19715
-
Arg
TCG
[ENA]
¢þ
>WENV183444541
OMCO01009829
[OMCO] human gut metagenome; feces
372
447
+
Arg
TCG
[ENA]
¢þ
>WENV183445231
OMCP01004695
[OMCP] human gut metagenome; feces
1417
1342
-
Arg
TCG
[ENA]
¢þ
>WENV183447124
OMCS01001621
[OMCS] human gut metagenome; feces
5509
5434
-
Arg
TCG
[ENA]
¢þ
>WENV183458220
OMDM01003053
[OMDM] human gut metagenome; feces
1365
1440
+
Arg
TCG
[ENA]
¢þ
>WENV183470775
OMEK01003999
[OMEK] human gut metagenome; feces
993
1068
+
Arg
TCG
[ENA]
¢þ
>WENV183473161
OMER01000946
[OMER] human gut metagenome; feces
2824
2899
+
Arg
TCG
[ENA]
¢þ
>WENV183475306
OMEV01014832
[OMEV] human gut metagenome; feces
324
399
+
Arg
TCG
[ENA]
¢þ
>WENV183486662
OMFR01003418
[OMFR] human gut metagenome; feces
3369
3294
-
Arg
TCG
[ENA]
¢þ
>WENV183517491
OMNP01002007
[OMNP] human gut metagenome; feces
3576
3501
-
Arg
TCG
[ENA]
¢þ
>WENV183519041
OMNT01000076
[OMNT] human gut metagenome; faeces
40198
40123
-
Arg
TCG
[ENA]
¢þ
>WENV183650157
OQVT01012321
[OQVT] human gut metagenome; human gut
517
442
-
Arg
TCG
[ENA]
¢þ
>WENV183775009
PPYF01064753
[PPYF] human gut metagenome; stool from patient with Crohn's disease
40319
40394
+
Arg
TCG
[ENA]
¢þ
>WENV170040017
CDYS01013837
[CDYS] gut metagenome; human stools
338
413
+
Arg
TCG
[ENA]
¢þ
>WENV170056930
CDZG01020267
[CDZG] gut metagenome; human stools
399
324
-
Arg
TCG
[ENA]
¢þ
>WENV170059577
CDZH01053297
[CDZH] gut metagenome; human stools
6037
5962
-
Arg
TCG
[ENA]
¢þ
>At0919
CP000678
Euryarchaeota
Methanobrevibacter smithii ATCC 35061 ATCC 35061; PS; DSMZ 861 [CP000678]
1378093
1378020
-
Arg
TCG
[Ensembl]
¡û
>W1910186502
CCXV01000027
Euryarchaeota
Methanobrevibacter smithii ACE6 [CCXV]
19895
19820
-
Arg
TCG
[ENA]
¡û
>W1910656098
MAIE01000051
Euryarchaeota
Methanobrevibacter sp. A54 [MAIE]
26988
26913
-
Arg
TCG
[ENA]
¡û
>W1610000918
ABYV02000006
Euryarchaeota
Methanobrevibacter smithii DSM 2374 [ABYV]
38265
38340
+
Arg
TCG
[ENA]
¡û
>W1610000974
ABYW01000012
Euryarchaeota
Methanobrevibacter smithii DSM 2375 [ABYW]
55037
54962
-
Arg
TCG
[ENA]
¡û
>W1610002307
AEKU01000017
Euryarchaeota
Methanobrevibacter smithii TS145A [AEKU]
30236
30311
+
Arg
TCG
[ENA]
¡û
>W1610002343
AELL01000026
Euryarchaeota
Methanobrevibacter smithii TS145B [AELL]
19999
19924
-
Arg
TCG
[ENA]
¡û
>W1610002392
AELM01000035
Euryarchaeota
Methanobrevibacter smithii TS146A [AELM]
20028
19953
-
Arg
TCG
[ENA]
¡û
>W1610002424
AELN01000023
Euryarchaeota
Methanobrevibacter smithii TS146B [AELN]
20024
19949
-
Arg
TCG
[ENA]
¡û
>W1610002455
AELO01000057
Euryarchaeota
Methanobrevibacter smithii TS146C [AELO]
20038
19963
-
Arg
TCG
[ENA]
¡û
>W1610002492
AELP01000020
Euryarchaeota
Methanobrevibacter smithii TS146D [AELP]
20022
19947
-
Arg
TCG
[ENA]
¡û
>W1610002952
AEMD01000074
Euryarchaeota
Methanobrevibacter smithii TS96C [AEMD]
21717
21642
-
Arg
TCG
[ENA]
¡û
>WENV078516
AAQK01000137
Gut microbiome of Human (healthy human stool sample 7)
4541
4463
-
Arg
TCG
[ENA]
>WENV078783
AAQL01000117
Gut microbiome of Human (healthy human stool sample 8)
1442
1364
-
Arg
TCG
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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