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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Haptophyceae
Anticodon = GAT
HIT:
4 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.291649 (16 seq.)
>WENV180590323
OCOT01000140
[OCOT] marine metagenome; ENVO:00002010
2662
2589
-
Ile
GAT
[ENA]
¢þ
>WENV181093068
OEBK01182485
[OEBK] marine metagenome; ENVO:00002010 for 'seawater
131
58
-
Ile
GAT
[ENA]
¢þ
>WENV182560048
OJDR01003137
[OJDR] seawater metagenome; Sea water
615
542
-
Ile
GAT
[ENA]
¢þ
>WENV182560115
OJDS01056897
[OJDS] seawater metagenome; Sea water
61
137
+
Ile
GAT
[ENA]
¢þ
>WENV182566351
OJEL01000017
[OJEL] seawater metagenome; Sea water
499
426
-
Ile
GAT
[ENA]
¢þ
>WENV183054459
OLGT01010842
[OLGT] seawater metagenome; Sea water
46
119
+
Ile
GAT
[ENA]
¢þ
>WENV183055627
OLHD01008493
[OLHD] seawater metagenome; Sea water
639
566
-
Ile
GAT
[ENA]
¢þ
>WENV183059846
OLHW01000017
[OLHW] seawater metagenome; Sea water
1837
1910
+
Ile
GAT
[ENA]
¢þ
>WENV183618980
OOFP01010875
[OOFP] marine metagenome; seawater
165
238
+
Ile
GAT
[ENA]
¢þ
>WENV183630046
OOGR01007490
[OOGR] marine metagenome; seawater
550
477
-
Ile
GAT
[ENA]
¢þ
>WENV170296548
CESE01017851
[CESE] marine metagenome genome assembly TARA_085_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
162
86
-
Ile
GAT
[ENA]
¢þ
>WENV170426578
CEUQ01096641
[CEUQ] marine metagenome genome assembly TARA_124_MIX_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
79
152
+
Ile
GAT
[ENA]
¢þ
>WENV170442556
CEUW01047016
[CEUW] marine metagenome genome assembly TARA_122_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
436
509
+
Ile
GAT
[ENA]
¢þ
>WENV170461680
CEVD01015205
[CEVD] marine metagenome genome assembly TARA_123_MIX_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
663
736
+
Ile
GAT
[ENA]
¢þ
>CHL1810009305
KC900889
Haptophyceae
Phaeocystis globosa (KC900889)
41304
41377
+
Ile
GAT
[ENA]
¡û
>WENV050066
AACY022843031
Marine microbial communities from Global Ocean Sampling (GOS)
251
175
-
Ile
GAT
[ENA]
Identical group No.344812 (5 seq.)
>WENV182557218
OJDI01002464
[OJDI] seawater metagenome; Sea water
555
631
+
Ile
GAT
[ENA]
¢þ
>WENV182574762
OJFS01001213
[OJFS] seawater metagenome; Sea water
7030
6954
-
Ile
GAT
[ENA]
¢þ
>WENV183057884
OLHM01017182
[OLHM] seawater metagenome; Sea water
681
605
-
Ile
GAT
[ENA]
¢þ
>CHL090101596
AY741371
Haptophyceae
Emiliania huxleyi
1614
1690
+
Ile
GAT
[ENA]
¡û
>CHL090101620
AY741371
Haptophyceae
Emiliania huxleyi
19252
19176
-
Ile
GAT
[ENA]
¡û
Identical group No.428327 (1 seq.)
>CHL1810008571
KC573041
Haptophyceae
Pavlova lutheri ATCC 50092 (KC573041)
95131
95208
+
Ile
GAT
[ENA]
¡û
Identical group No.445244 (1 seq.)
>CHL1810057806
MG520331
Haptophyceae
Chrysochromulina parva (MG520331)
101333
101408
+
Ile
GAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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