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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Herelleviridae
Anticodon = CAT
HIT:
12 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.305919 (6 seq.)
>WENV182598004
OJJD01000051
[OJJD] metagenome; faeces
108484
108557
+
Met
CAT
[ENA]
¢þ
>PHG0100196
AP009390
Myoviridae
Enterococcus phage phiEF24C (AP009390)
137054
136981
-
Met
CAT
[ENA]
¡û
>PHG181000127
AP018714
Herelleviridae
Enterococcus phage phiEF17H (AP018714)
139075
139002
-
Met
CAT
[ENA]
¡û
>PHG181000133
AP018715
Herelleviridae
Enterococcus phage phiM1EF22 (AP018715)
138020
137947
-
Met
CAT
[ENA]
¡û
>PHG14100006
AB609718
Myoviridae
Enterococcus phage phiEF24C-P2 (AB609718)
137054
136981
-
Met
CAT
[ENA]
¡û
>PHG14103031
KJ801817
Myoviridae
Enterococcus phage ECP3 IB4755 (KJ801817)
102473
102546
+
Met
CAT
[ENA]
¡û
Identical group No.509718 (3 seq.)
>WENV170965895
MTEV01008568
[MTEV] soil metagenome; soil bioaugmentation with soil previously exposed to atrazine
10101
10029
-
Met
CAT
[ENA]
¢þ
>PHG181001452
KT224359
Herelleviridae
Bacillus phage TsarBomba (KT224359)
29079
29151
+
Met
CAT
[ENA]
¡û
>PHG14101362
JN797798
Myoviridae
Bacillus phage BCU4 Bongo (JN797798)
148095
148023
-
Met
CAT
[ENA]
¡û
Identical group No.543505 (6 seq.)
>WENV180279388
OBHX01033328
[OBHX] metagenome; feces
1364
1292
-
Ile2
CAT
[ENA]
¢þ
>WENV180334944
OBLF01098127
[OBLF] metagenome; feces
136
208
+
Ile2
CAT
[ENA]
¢þ
>WENV180349252
OBLO01030211
[OBLO] metagenome; feces
719
791
+
Ile2
CAT
[ENA]
¢þ
>WENV170560020
CYGL01000015
[CYGL] human gut metagenome;
49833
49905
+
Met
CAT
[ENA]
¢þ
>WENV170560583
CYGL01008960
[CYGL] human gut metagenome;
88
160
+
Met
CAT
[ENA]
¢þ
>PHG181000871
KP339049
Herelleviridae
Enterococcus phage EFDG1 (KP339049)
52309
52237
-
Met
CAT
[ENA]
¡û
Identical group No.549161 (1 seq.)
>PHG181003707
KX961630
Herelleviridae
Bacillus phage QCM8 (KX961630)
28796
28868
+
Met
CAT
[ENA]
¡û
Identical group No.601816 (3 seq.)
>PHG181001430
KT187252
Herelleviridae
Bacillus phage PBC6 (KT187252)
109
37
-
Met
CAT
[ENA]
¡û
>PHG181003726
KX987999
Herelleviridae
Bacillus phage BCP12 (KX987999)
125162
125090
-
Met
CAT
[ENA]
¡û
>PHG14101346
JN797797
Myoviridae
Bacillus phage BCP78 Bongo (JN797797)
109
37
-
Met
CAT
[ENA]
¡û
Identical group No.653905 (34 seq.)
>PHG0100229
AY176327
Myoviridae
Staphylococcus virus K PaP3 (AY176327)
7222
7151
-
Met
CAT
[ENA]
¡û
>PHG0100345
AY954969
Myoviridae
Staphylococcus virus G1 phi812b (AY954969)
110723
110652
-
Met
CAT
[ENA]
¡û
>PHG181000686
KJ206559
Herelleviridae
Staphylococcus phage 812 (KJ206559)
14469
14398
-
Met
CAT
[ENA]
¡û
>PHG181000689
KJ206560
Herelleviridae
Staphylococcus phage 812 (KJ206560)
14504
14433
-
Met
CAT
[ENA]
¡û
>PHG181000692
KJ206561
Herelleviridae
Staphylococcus phage 812 (KJ206561)
14469
14398
-
Met
CAT
[ENA]
¡û
>PHG181000695
KJ206562
Herelleviridae
Staphylococcus phage 812 (KJ206562)
14491
14420
-
Met
CAT
[ENA]
¡û
>PHG181000698
KJ206563
Herelleviridae
Staphylococcus phage 812 (KJ206563)
14504
14433
-
Met
CAT
[ENA]
¡û
>PHG181000817
KP027446
Herelleviridae
Staphylococcus phage phiIPLA-RODI (KP027446)
8574
8503
-
Met
CAT
[ENA]
¡û
>PHG181000977
KP687431
Herelleviridae
Staphylococcus phage IME-SA1 (KP687431)
127845
127774
-
Met
CAT
[ENA]
¡û
>PHG181000982
KP687432
Herelleviridae
Staphylococcus phage IME-SA2 (KP687432)
5977
5906
-
Met
CAT
[ENA]
¡û
>PHG181001336
KR902361
Herelleviridae
Staphylococcus phage IME-SA118 (KR902361)
20723
20652
-
Met
CAT
[ENA]
¡û
>PHG181001340
KR908644
Herelleviridae
Staphylococcus phage IME-SA119 (KR908644)
31005
31076
+
Met
CAT
[ENA]
¡û
>PHG181004193
KY581279
Herelleviridae
Staphylococcus phage pSa-3 (KY581279)
11673
11602
-
Met
CAT
[ENA]
¡û
>PHG181004348
KY779849
Herelleviridae
Staphylococcus phage qdsa002 (KY779849)
19559
19488
-
Met
CAT
[ENA]
¡û
>PHG181004390
KY794641
Herelleviridae
Staphylococcus phage vB_Sau_CG (KY794641)
117614
117543
-
Met
CAT
[ENA]
¡û
>PHG181005570
MF398190
Herelleviridae
Staphylococcus phage vB_SauM-fRuSau02 (MF398190)
14821
14750
-
Met
CAT
[ENA]
¡û
>PHG181005618
MF405094
Herelleviridae
Staphylococcus phage JA1 Staphylococcus aureus CIT281189 (MF405094)
14396
14325
-
Met
CAT
[ENA]
¡û
>PHG181007060
MG656408
Herelleviridae
Staphylococcus phage B1 Staphylococcus aureus DPC5246 (MG656408)
14821
14750
-
Met
CAT
[ENA]
¡û
>PHG181007185
MG721208
Herelleviridae
Staphylococcus phage vB_SauM_LM12 (MG721208)
132009
132080
+
Met
CAT
[ENA]
¡û
>PHG181007789
MH107769
Herelleviridae
Staphylococcus phage vB_SauM_0414_108 (MH107769)
15810
15739
-
Met
CAT
[ENA]
¡û
>PHG181007792
MH136584
Herelleviridae
Staphylococcus phage HYZ21 (MH136584)
5285
5214
-
Met
CAT
[ENA]
¡û
>PHG14100050
EU418428
Myoviridae
Staphylococcus phage A5W PAS39 (EU418428)
14269
14198
-
Met
CAT
[ENA]
¡û
>PHG14100192
FR852584
Myoviridae
Staphylococcus phage ISP ATCC 35860-B1 (FR852584)
110727
110656
-
Met
CAT
[ENA]
¡û
>PHG14100581
HQ163896
Myoviridae
Staphylococcus phage Sb-1 Aabphi01 (HQ163896)
7264
7193
-
Met
CAT
[ENA]
¡û
>PHG14101509
JQ686190
Myoviridae
Staphylococcus phage GH15 DEC5E (JQ686190)
15424
15353
-
Met
CAT
[ENA]
¡û
>PHG14101618
JX080300
Myoviridae
Staphylococcus phage Staph1N Lu11 (JX080300)
14269
14198
-
Met
CAT
[ENA]
¡û
>PHG14101621
JX080301
Myoviridae
Staphylococcus phage A3R Lu11 (JX080301)
14144
14073
-
Met
CAT
[ENA]
¡û
>PHG14101624
JX080302
Myoviridae
Staphylococcus phage 676Z Lu11 (JX080302)
15191
15120
-
Met
CAT
[ENA]
¡û
>PHG14101627
JX080303
Myoviridae
Staphylococcus phage Fi200W Lu11 (JX080303)
15150
15079
-
Met
CAT
[ENA]
¡û
>PHG14101630
JX080304
Myoviridae
Staphylococcus phage MSA6 Lu11 (JX080304)
14793
14722
-
Met
CAT
[ENA]
¡û
>PHG14101633
JX080305
Myoviridae
Staphylococcus phage P4W Lu11 (JX080305)
14252
14181
-
Met
CAT
[ENA]
¡û
>PHG14101982
JX875065
Myoviridae
Staphylococcus phage SA5 Pseudomonas putida GB-1 (JX875065)
56903
56974
+
Met
CAT
[ENA]
¡û
>PHG14102000
KC012913
Myoviridae
Staphylococcus phage Team1 TN106 (KC012913)
14808
14737
-
Met
CAT
[ENA]
¡û
>PHG14102636
KF766114
Myoviridae
Staphylococcus virus K Klebsiella pneumoniae (KF766114)
14300
14229
-
Met
CAT
[ENA]
¡û
Identical group No.669926 (1 seq.)
>PHG181002001
KU253712
Herelleviridae
Bacillus phage Eldridge (KU253712)
31833
31904
+
Met
CAT
[ENA]
¡û
Identical group No.684222 (2 seq.)
>WENV170965953
MTEV01010523
[MTEV] soil metagenome; soil bioaugmentation with soil previously exposed to atrazine
420
494
+
Met
CAT
[ENA]
¢þ
>PHG181000724
KJ676859
Herelleviridae
Bacillus phage JBP901 (KJ676859)
156115
156041
-
Met
CAT
[ENA]
¡û
Identical group No.712886 (3 seq.)
>PHG181004864
MF001365
Herelleviridae
Staphylococcus phage SA3 (MF001365)
130594
130523
-
Met
CAT
[ENA]
¡û
>PHG14103035
KJ888149
Myoviridae
Staphylococcus phage MCE-2014 IB4755 (KJ888149)
16468
16397
-
Met
CAT
[ENA]
¡û
>PHG14103066
KM216423
Myoviridae
Staphylococcus phage P108 LIKBL0011 (KM216423)
95050
94979
-
Met
CAT
[ENA]
¡û
Identical group No.738439 (6 seq.)
>WENV170965327
MTEU01000595
[MTEU] soil metagenome; naturally attenuated soil
2937
2863
-
Met
CAT
[ENA]
¢þ
>WENV170966191
MTEX01003701
[MTEX] soil metagenome; soil biostimulated with molasses as carbon source
14996
14922
-
Met
CAT
[ENA]
¢þ
>PHG181000683
KJ081346
Herelleviridae
Bacillus phage BCP8-2 (KJ081346)
33526
33452
-
Met
CAT
[ENA]
¡û
>PHG181001921
KT995480
Herelleviridae
Bacillus virus BM15 (KT995480)
31029
31103
+
Met
CAT
[ENA]
¡û
>PHG181003377
KX495186
Herelleviridae
Bacillus phage PK16 (KX495186)
154585
154511
-
Met
CAT
[ENA]
¡û
>PHG14102838
KJ451625
Myoviridae
Bacillus phage Bcp1 TahiMoana (KJ451625)
32921
32995
+
Met
CAT
[ENA]
¡û
Identical group No.755889 (1 seq.)
>PHG181002095
KU577463
Herelleviridae
Bacillus phage Deep Blue (KU577463)
140416
140342
-
Met
CAT
[ENA]
¡û
Identical group No.786858 (20 seq.)
>PHG0100393
DQ003638
Myoviridae
Listeria virus A511 T4dC-46 (DQ003638)
25908
25835
-
Met
CAT
[ENA]
¡û
>PHG0100409
DQ004855
Myoviridae
Listeria virus P100 T4dC-46 (DQ004855)
123785
123712
-
Met
CAT
[ENA]
¡û
>PHG0100606
FJ147496
unclassified bacterial viruses
Listeria phage 20422-1 N4 (FJ147496)
898
825
-
Met
CAT
[ENA]
¡û
>PHG0100607
FJ147504
unclassified bacterial viruses
Listeria phage 805405-1 N4 (FJ147504)
898
825
-
Met
CAT
[ENA]
¡û
>PHG182000014
KT319598
Myoviridae
Listeria phage WIL-2 (KT319598)
5858
5931
+
Met
CAT
[ENA]
¡û
>PHG181001530
KT319633
Herelleviridae
Listeria phage WIL-3 (KT319633)
468
395
-
Met
CAT
[ENA]
¡û
>PHG14101588
JQ797329
Myoviridae
Listeria phage vB_LmoM_AG20 Lu11 (JQ797329)
25906
25833
-
Met
CAT
[ENA]
¡û
>PHG14101794
JX126918
Myoviridae
Listeria phage LP-125 Lu11 (JX126918)
35357
35284
-
Met
CAT
[ENA]
¡û
>PHG14102712
KJ094029
Myoviridae
Listeria phage LP-064 RIP1 (KJ094029)
35358
35285
-
Met
CAT
[ENA]
¡û
>PHG14102728
KJ094030
Myoviridae
Listeria phage LP-083-2 RIP1 (KJ094030)
32024
31951
-
Met
CAT
[ENA]
¡û
>PHG14102744
KJ094031
Myoviridae
Listeria phage LP-124 RIP1 (KJ094031)
129909
129836
-
Met
CAT
[ENA]
¡û
>PHG14102761
KJ094033
Myoviridae
Listeria phage LP-048 RIP1 (KJ094033)
27883
27810
-
Met
CAT
[ENA]
¡û
>PHG14102914
KJ535721
Myoviridae
Listeria phage List-36 (KJ535721)
103142
103215
+
Met
CAT
[ENA]
¡û
>PHG14102927
KJ535722
Myoviridae
Listeria phage LMSP-25 (KJ535722)
41774
41701
-
Met
CAT
[ENA]
¡û
>PHG14102945
KJ586794
Myoviridae
Listeria phage LMTA-34 LMSP-25 (KJ586794)
41774
41701
-
Met
CAT
[ENA]
¡û
>PHG14102958
KJ586795
Myoviridae
Listeria phage LMTA-94 LMSP-25 (KJ586795)
105850
105923
+
Met
CAT
[ENA]
¡û
>PHG14102967
KJ591604
Myoviridae
Listeria phage LMTA-148 LMSP-25 (KJ591604)
34562
34489
-
Met
CAT
[ENA]
¡û
>PHG14102980
KJ591605
Myoviridae
Listeria phage LMTA-57 LMSP-25 (KJ591605)
115946
116019
+
Met
CAT
[ENA]
¡û
>PHG14103027
KJ668715
Myoviridae
Listeria phage LMTA-34 IB4755 (KJ668715)
92507
92580
+
Met
CAT
[ENA]
¡û
>PHG14103143
KM373208
Myoviridae
Listeria phage WIL-1 81 (KM373208)
6146
6219
+
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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