This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
Herelleviridae
Anticodon = CCA
HIT:
9 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.669904 (23 seq.)
>PHG0300035
AY176327
Myoviridae
Staphylococcus virus K PaP3 (AY176327)
30441
30370
-
Trp
CCA
[ENA]
¡û
>PHG0300063
AY954969
Myoviridae
Staphylococcus virus G1 phi812b (AY954969)
133941
133870
-
Trp
CCA
[ENA]
¡û
>PHG185000002
AP018375
Herelleviridae
Staphylococcus phage phiSA039 (AP018375)
27174
27103
-
Trp
CCA
[ENA]
¡û
>PHG185000008
KJ206559
Herelleviridae
Staphylococcus phage 812 (KJ206559)
37688
37617
-
Trp
CCA
[ENA]
¡û
>PHG185000009
KJ206560
Herelleviridae
Staphylococcus phage 812 (KJ206560)
37723
37652
-
Trp
CCA
[ENA]
¡û
>PHG185000010
KJ206561
Herelleviridae
Staphylococcus phage 812 (KJ206561)
37655
37584
-
Trp
CCA
[ENA]
¡û
>PHG185000011
KJ206562
Herelleviridae
Staphylococcus phage 812 (KJ206562)
36201
36130
-
Trp
CCA
[ENA]
¡û
>PHG185000012
KJ206563
Herelleviridae
Staphylococcus phage 812 (KJ206563)
36214
36143
-
Trp
CCA
[ENA]
¡û
>PHG185000019
KP027446
Herelleviridae
Staphylococcus phage phiIPLA-RODI (KP027446)
30889
30818
-
Trp
CCA
[ENA]
¡û
>PHG185000021
KP687431
Herelleviridae
Staphylococcus phage IME-SA1 (KP687431)
10843
10772
-
Trp
CCA
[ENA]
¡û
>PHG185000022
KP687432
Herelleviridae
Staphylococcus phage IME-SA2 (KP687432)
29186
29115
-
Trp
CCA
[ENA]
¡û
>PHG185000041
KR902361
Herelleviridae
Staphylococcus phage IME-SA118 (KR902361)
43937
43866
-
Trp
CCA
[ENA]
¡û
>PHG185000042
KR908644
Herelleviridae
Staphylococcus phage IME-SA119 (KR908644)
7788
7859
+
Trp
CCA
[ENA]
¡û
>PHG185000160
KY581279
Herelleviridae
Staphylococcus phage pSa-3 (KY581279)
34891
34820
-
Trp
CCA
[ENA]
¡û
>PHG185000163
KY779849
Herelleviridae
Staphylococcus phage qdsa002 (KY779849)
41210
41139
-
Trp
CCA
[ENA]
¡û
>PHG185000166
KY794641
Herelleviridae
Staphylococcus phage vB_Sau_CG (KY794641)
138527
138456
-
Trp
CCA
[ENA]
¡û
>PHG185000172
MF001365
Herelleviridae
Staphylococcus phage SA3 (MF001365)
10686
10615
-
Trp
CCA
[ENA]
¡û
>PHG185000201
MF398190
Herelleviridae
Staphylococcus phage vB_SauM-fRuSau02 (MF398190)
38039
37968
-
Trp
CCA
[ENA]
¡û
>PHG185000202
MF405094
Herelleviridae
Staphylococcus phage JA1 Staphylococcus aureus CIT281189 (MF405094)
37613
37542
-
Trp
CCA
[ENA]
¡û
>PHG185000275
MG656408
Herelleviridae
Staphylococcus phage B1 Staphylococcus aureus DPC5246 (MG656408)
38040
37969
-
Trp
CCA
[ENA]
¡û
>PHG185000290
MG721208
Herelleviridae
Staphylococcus phage vB_SauM_LM12 (MG721208)
109015
109086
+
Trp
CCA
[ENA]
¡û
>PHG185000329
MH107769
Herelleviridae
Staphylococcus phage vB_SauM_0414_108 (MH107769)
37429
37358
-
Trp
CCA
[ENA]
¡û
>PHG185000330
MH136584
Herelleviridae
Staphylococcus phage HYZ21 (MH136584)
28504
28433
-
Trp
CCA
[ENA]
¡û
Identical group No.675528 (6 seq.)
>WENV182598000
OJJD01000051
[OJJD] metagenome; faeces
106922
106995
+
Trp
CCA
[ENA]
¢þ
>PHG0100194
AP009390
Myoviridae
Enterococcus phage phiEF24C (AP009390)
139229
139156
-
Trp
CCA
[ENA]
¡û
>PHG181000123
AP018714
Herelleviridae
Enterococcus phage phiEF17H (AP018714)
140788
140715
-
Trp
CCA
[ENA]
¡û
>PHG181000130
AP018715
Herelleviridae
Enterococcus phage phiM1EF22 (AP018715)
140195
140122
-
Trp
CCA
[ENA]
¡û
>PHG14100004
AB609718
Myoviridae
Enterococcus phage phiEF24C-P2 (AB609718)
139229
139156
-
Trp
CCA
[ENA]
¡û
>PHG14103029
KJ801817
Myoviridae
Enterococcus phage ECP3 IB4755 (KJ801817)
100412
100485
+
Trp
CCA
[ENA]
¡û
Identical group No.695879 (12 seq.)
>PHG0100385
DQ003638
Myoviridae
Listeria virus A511 T4dC-46 (DQ003638)
29594
29521
-
Trp
CCA
[ENA]
¡û
>PHG0100401
DQ004855
Myoviridae
Listeria virus P100 T4dC-46 (DQ004855)
127470
127397
-
Trp
CCA
[ENA]
¡û
>PHG181001508
KT319598
Myoviridae
Listeria phage WIL-2 (KT319598)
2161
2234
+
Trp
CCA
[ENA]
¡û
>PHG181001522
KT319610
Herelleviridae
Listeria phage WIL-3 (KT319610)
2082
2155
+
Trp
CCA
[ENA]
¡û
>PHG14101786
JX126918
Myoviridae
Listeria phage LP-125 Lu11 (JX126918)
39054
38981
-
Trp
CCA
[ENA]
¡û
>PHG14102704
KJ094029
Myoviridae
Listeria phage LP-064 RIP1 (KJ094029)
39055
38982
-
Trp
CCA
[ENA]
¡û
>PHG14102720
KJ094030
Myoviridae
Listeria phage LP-083-2 RIP1 (KJ094030)
35721
35648
-
Trp
CCA
[ENA]
¡û
>PHG14102736
KJ094031
Myoviridae
Listeria phage LP-124 RIP1 (KJ094031)
133606
133533
-
Trp
CCA
[ENA]
¡û
>PHG14102753
KJ094033
Myoviridae
Listeria phage LP-048 RIP1 (KJ094033)
31582
31509
-
Trp
CCA
[ENA]
¡û
>PHG14102906
KJ535721
Myoviridae
Listeria phage List-36 (KJ535721)
99456
99529
+
Trp
CCA
[ENA]
¡û
>PHG14103019
KJ668715
Myoviridae
Listeria phage LMTA-34 IB4755 (KJ668715)
89194
89267
+
Trp
CCA
[ENA]
¡û
>PHG14103135
KM373208
Myoviridae
Listeria phage WIL-1 81 (KM373208)
2449
2522
+
Trp
CCA
[ENA]
¡û
Identical group No.729288 (5 seq.)
>WENV180279389
OBHX01033328
[OBHX] metagenome; feces
1075
1002
-
Trp
CCA
[ENA]
¢þ
>WENV180349253
OBLO01030211
[OBLO] metagenome; feces
1008
1081
+
Trp
CCA
[ENA]
¢þ
>WENV170560021
CYGL01000015
[CYGL] human gut metagenome;
50121
50194
+
Trp
CCA
[ENA]
¢þ
>PHG181000872
KP339049
Herelleviridae
Enterococcus phage EFDG1 (KP339049)
52026
51953
-
Trp
CCA
[ENA]
¡û
>PHG181003996
KY549443
Herelleviridae
Enterococcus phage EFP01 (KY549443)
107475
107548
+
Trp
CCA
[ENA]
¡û
Identical group No.786867 (1 seq.)
>PHG181002000
KU253712
Herelleviridae
Bacillus phage Eldridge (KU253712)
31366
31439
+
Trp
CCA
[ENA]
¡û
Identical group No.787922 (7 seq.)
>PHG181002321
KU737346
Herelleviridae
Bacillus phage Vinny (KU737346)
32704
32777
+
Trp
CCA
[ENA]
¡û
>PHG181005158
MF288921
Herelleviridae
Bacillus phage OTooleKemple52 (MF288921)
32179
32252
+
Trp
CCA
[ENA]
¡û
>PHG181005164
MF288922
Herelleviridae
Bacillus phage Janet (MF288922)
32939
33012
+
Trp
CCA
[ENA]
¡û
>PHG181005958
MF498901
Herelleviridae
Bacillus phage Anthony (MF498901)
32704
32777
+
Trp
CCA
[ENA]
¡û
>PHG14100991
JF966203
Myoviridae
Bacillus phage Bastille KSSJEB (JF966203)
6692
6765
+
Trp
CCA
[ENA]
¡û
>PHG14102885
KJ489398
Myoviridae
Bacillus phage Evoli GT7 (KJ489398)
32599
32672
+
Trp
CCA
[ENA]
¡û
>PHG14102892
KJ489400
Myoviridae
Bacillus phage Hoody T GT7 (KJ489400)
32689
32762
+
Trp
CCA
[ENA]
¡û
Identical group No.793265 (1 seq.)
>PHG181008442
MH538296
Herelleviridae
Bacillus phage Maceta (MH538296)
44119
44046
-
Trp
CCA
[ENA]
¡û
Identical group No.805598 (1 seq.)
>PHG181003706
KX961630
Herelleviridae
Bacillus phage QCM8 (KX961630)
28717
28789
+
Trp
CCA
[ENA]
¡û
Identical group No.825943 (1 seq.)
>PHG181002094
KU577463
Herelleviridae
Bacillus phage Deep Blue (KU577463)
140493
140420
-
Trp
CCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK