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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Herelleviridae
Anticodon = GAT
HIT:
10 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.318900 (1 seq.)
>PHG181000722
KJ676859
Herelleviridae
Bacillus phage JBP901 (KJ676859)
156376
156300
-
Ile
GAT
[ENA]
¡û
Identical group No.323618 (3 seq.)
>WENV170965948
MTEV01010486
[MTEV] soil metagenome; soil bioaugmentation with soil previously exposed to atrazine
324
248
-
Ile
GAT
[ENA]
¢þ
>PHG181003724
KX987999
Herelleviridae
Bacillus phage BCP12 (KX987999)
125564
125488
-
Ile
GAT
[ENA]
¡û
>PHG14101344
JN797797
Myoviridae
Bacillus phage BCP78 Bongo (JN797797)
511
435
-
Ile
GAT
[ENA]
¡û
Identical group No.335764 (1 seq.)
>PHG181001450
KT224359
Herelleviridae
Bacillus phage TsarBomba (KT224359)
28674
28750
+
Ile
GAT
[ENA]
¡û
Identical group No.337465 (2 seq.)
>PHG181003375
KX495186
Herelleviridae
Bacillus phage PK16 (KX495186)
154847
154771
-
Ile
GAT
[ENA]
¡û
>PHG14101648
JX094431
Myoviridae
Bacillus phage vB_BceM_Bc431v3 Lu11 (JX094431)
156262
156186
-
Ile
GAT
[ENA]
¡û
Identical group No.397513 (3 seq.)
>WENV170965325
MTEU01000595
[MTEU] soil metagenome; naturally attenuated soil
3199
3123
-
Ile
GAT
[ENA]
¢þ
>WENV170966189
MTEX01003701
[MTEX] soil metagenome; soil biostimulated with molasses as carbon source
15258
15182
-
Ile
GAT
[ENA]
¢þ
>PHG181000681
KJ081346
Herelleviridae
Bacillus phage BCP8-2 (KJ081346)
33876
33800
-
Ile
GAT
[ENA]
¡û
Identical group No.406212 (1 seq.)
>PHG181001429
KT187252
Herelleviridae
Bacillus phage PBC6 (KT187252)
425
349
-
Ile
GAT
[ENA]
¡û
Identical group No.421673 (1 seq.)
>PHG181002092
KU577463
Herelleviridae
Bacillus phage Deep Blue (KU577463)
140660
140584
-
Ile
GAT
[ENA]
¡û
Identical group No.428299 (2 seq.)
>WENV170560222
CYGL01000227
[CYGL] human gut metagenome;
28561
28488
-
Ile
GAT
[ENA]
¢þ
>PHG181000880
KP339049
Herelleviridae
Enterococcus phage EFDG1 (KP339049)
49111
49038
-
Ile
GAT
[ENA]
¡û
Identical group No.685834 (12 seq.)
>PHG183000218
KT319598
Myoviridae
Listeria phage WIL-2 (KT319598)
674
746
+
Ile
GAT
[ENA]
¡û
>PHG183000219
KT319610
Herelleviridae
Listeria phage WIL-3 (KT319610)
595
667
+
Ile
GAT
[ENA]
¡û
>PHG14300256
JQ797329
Myoviridae
Listeria phage vB_LmoM_AG20 Lu11 (JQ797329)
30437
30365
-
Ile
GAT
[ENA]
¡û
>PHG14300288
JX126918
Myoviridae
Listeria phage LP-125 Lu11 (JX126918)
40541
40469
-
Ile
GAT
[ENA]
¡û
>PHG14300461
KJ094029
Myoviridae
Listeria phage LP-064 RIP1 (KJ094029)
40542
40470
-
Ile
GAT
[ENA]
¡û
>PHG14300462
KJ094030
Myoviridae
Listeria phage LP-083-2 RIP1 (KJ094030)
37208
37136
-
Ile
GAT
[ENA]
¡û
>PHG14300463
KJ094031
Myoviridae
Listeria phage LP-124 RIP1 (KJ094031)
135093
135021
-
Ile
GAT
[ENA]
¡û
>PHG14300480
KJ535721
Myoviridae
Listeria phage List-36 (KJ535721)
97969
98041
+
Ile
GAT
[ENA]
¡û
>PHG14300481
KJ535722
Myoviridae
Listeria phage LMSP-25 (KJ535722)
46442
46370
-
Ile
GAT
[ENA]
¡û
>PHG14300482
KJ586794
Myoviridae
Listeria phage LMTA-34 LMSP-25 (KJ586794)
46442
46370
-
Ile
GAT
[ENA]
¡û
>PHG14300485
KJ591605
Myoviridae
Listeria phage LMTA-57 LMSP-25 (KJ591605)
111278
111350
+
Ile
GAT
[ENA]
¡û
>PHG14300507
KM373208
Myoviridae
Listeria phage WIL-1 81 (KM373208)
962
1034
+
Ile
GAT
[ENA]
¡û
Identical group No.770392 (1 seq.)
>PHG181001919
KT995480
Herelleviridae
Bacillus virus BM15 (KT995480)
30766
30840
+
Ile
GAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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