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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Herelleviridae
Anticodon = GCA
HIT:
10 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.207758 (3 seq.)
>PHG181000709
KJ676859
Herelleviridae
Bacillus phage JBP901 (KJ676859)
158812
158739
-
Cys
GCA
[ENA]
¡û
>PHG181001907
KT995480
Herelleviridae
Bacillus virus BM15 (KT995480)
29156
29229
+
Cys
GCA
[ENA]
¡û
>PHG14102824
KJ451625
Myoviridae
Bacillus phage Bcp1 TahiMoana (KJ451625)
30893
30966
+
Cys
GCA
[ENA]
¡û
Identical group No.210546 (3 seq.)
>WENV170965933
MTEV01010486
[MTEV] soil metagenome; soil bioaugmentation with soil previously exposed to atrazine
2312
2239
-
Cys
GCA
[ENA]
¢þ
>PHG181003711
KX987999
Herelleviridae
Bacillus phage BCP12 (KX987999)
127833
127760
-
Cys
GCA
[ENA]
¡û
>PHG14101331
JN797797
Myoviridae
Bacillus phage BCP78 Bongo (JN797797)
2780
2707
-
Cys
GCA
[ENA]
¡û
Identical group No.218094 (1 seq.)
>PHG181001436
KT224359
Herelleviridae
Bacillus phage TsarBomba (KT224359)
26558
26631
+
Cys
GCA
[ENA]
¡û
Identical group No.251840 (1 seq.)
>PHG181000671
KJ081346
Herelleviridae
Bacillus phage BCP8-2 (KJ081346)
36298
36225
-
Cys
GCA
[ENA]
¡û
Identical group No.264678 (1 seq.)
>PHG181002079
KU577463
Herelleviridae
Bacillus phage Deep Blue (KU577463)
142802
142729
-
Cys
GCA
[ENA]
¡û
Identical group No.341936 (1 seq.)
>PHG181003696
KX961630
Herelleviridae
Bacillus phage QCM8 (KX961630)
26999
27071
+
Cys
GCA
[ENA]
¡û
Identical group No.370772 (1 seq.)
>PHG181001416
KT187252
Herelleviridae
Bacillus phage PBC6 (KT187252)
2571
2499
-
Cys
GCA
[ENA]
¡û
Identical group No.384710 (2 seq.)
>WENV170560585
CYGL01008960
[CYGL] human gut metagenome;
685
757
+
Cys
GCA
[ENA]
¢þ
>PHG181000873
KP339049
Herelleviridae
Enterococcus phage EFDG1 (KP339049)
51713
51641
-
Cys
GCA
[ENA]
¡û
Identical group No.384711 (1 seq.)
>PHG181003364
KX495186
Herelleviridae
Bacillus phage PK16 (KX495186)
157420
157348
-
Cys
GCA
[ENA]
¡û
Identical group No.486543 (18 seq.)
>PHG0100378
DQ003638
Myoviridae
Listeria virus A511 T4dC-46 (DQ003638)
31496
31426
-
Cys
GCA
[ENA]
¡û
>PHG0100394
DQ004855
Myoviridae
Listeria virus P100 T4dC-46 (DQ004855)
129372
129302
-
Cys
GCA
[ENA]
¡û
>PHG181001502
KT319598
Myoviridae
Listeria phage WIL-2 (KT319598)
262
332
+
Cys
GCA
[ENA]
¡û
>PHG181001516
KT319610
Herelleviridae
Listeria phage WIL-3 (KT319610)
183
253
+
Cys
GCA
[ENA]
¡û
>PHG14101573
JQ797329
Myoviridae
Listeria phage vB_LmoM_AG20 Lu11 (JQ797329)
30849
30779
-
Cys
GCA
[ENA]
¡û
>PHG14101779
JX126918
Myoviridae
Listeria phage LP-125 Lu11 (JX126918)
40953
40883
-
Cys
GCA
[ENA]
¡û
>PHG14102697
KJ094029
Myoviridae
Listeria phage LP-064 RIP1 (KJ094029)
40954
40884
-
Cys
GCA
[ENA]
¡û
>PHG14102713
KJ094030
Myoviridae
Listeria phage LP-083-2 RIP1 (KJ094030)
37620
37550
-
Cys
GCA
[ENA]
¡û
>PHG14102729
KJ094031
Myoviridae
Listeria phage LP-124 RIP1 (KJ094031)
135505
135435
-
Cys
GCA
[ENA]
¡û
>PHG14102746
KJ094033
Myoviridae
Listeria phage LP-048 RIP1 (KJ094033)
33441
33371
-
Cys
GCA
[ENA]
¡û
>PHG14102899
KJ535721
Myoviridae
Listeria phage List-36 (KJ535721)
97557
97627
+
Cys
GCA
[ENA]
¡û
>PHG14102915
KJ535722
Myoviridae
Listeria phage LMSP-25 (KJ535722)
46855
46785
-
Cys
GCA
[ENA]
¡û
>PHG14102933
KJ586794
Myoviridae
Listeria phage LMTA-34 LMSP-25 (KJ586794)
46855
46785
-
Cys
GCA
[ENA]
¡û
>PHG14102946
KJ586795
Myoviridae
Listeria phage LMTA-94 LMSP-25 (KJ586795)
100460
100530
+
Cys
GCA
[ENA]
¡û
>PHG14102959
KJ591604
Myoviridae
Listeria phage LMTA-148 LMSP-25 (KJ591604)
38927
38857
-
Cys
GCA
[ENA]
¡û
>PHG14102968
KJ591605
Myoviridae
Listeria phage LMTA-57 LMSP-25 (KJ591605)
110865
110935
+
Cys
GCA
[ENA]
¡û
>PHG14103013
KJ668715
Myoviridae
Listeria phage LMTA-34 IB4755 (KJ668715)
87337
87407
+
Cys
GCA
[ENA]
¡û
>PHG14103128
KM373208
Myoviridae
Listeria phage WIL-1 81 (KM373208)
550
620
+
Cys
GCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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