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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Herelleviridae
Anticodon = GTA
HIT:
9 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.81168 (9 seq.)
>PL171001473
CP020938
Firmicutes
Bacillus cereus BC-AK plasmid:pBC244
113860
113774
-
Tyr
GTA
[ENA]
¡û
>WENV170965947
MTEV01010486
[MTEV] soil metagenome; soil bioaugmentation with soil previously exposed to atrazine
412
326
-
Tyr
GTA
[ENA]
¢þ
>PHG181001428
KT187252
Herelleviridae
Bacillus phage PBC6 (KT187252)
513
427
-
Tyr
GTA
[ENA]
¡û
>PHG181001449
KT224359
Herelleviridae
Bacillus phage TsarBomba (KT224359)
28586
28672
+
Tyr
GTA
[ENA]
¡û
>PHG181003723
KX987999
Herelleviridae
Bacillus phage BCP12 (KX987999)
125652
125566
-
Tyr
GTA
[ENA]
¡û
>PHG14101343
JN797797
Myoviridae
Bacillus phage BCP78 Bongo (JN797797)
599
513
-
Tyr
GTA
[ENA]
¡û
>W1911299591
NTUQ01000021
Bacillota
Bacillus cereus AFS015717 [NTUQ]
96351
96437
+
Tyr
GTA
[ENA]
¡û
>W1911378703
NVMF01000010
Bacillota
Bacillus thuringiensis AFS094730 [NVMF]
6081
6167
+
Tyr
GTA
[ENA]
¡û
>W1511536595
JYPL01000109
Bacillota
Bacillus cereus HWW 274-2 [JYPL]
122622
122536
-
Tyr
GTA
[ENA]
¡û
Identical group No.86441 (4 seq.)
>PHG182000050
LT960608
Herelleviridae
Bacillus phage SBSphiJ (LT960608)
44056
44139
+
Tyr
GTA
[ENA]
¡û
>PHG182000057
MF422185
Herelleviridae
Bacillus phage BSP10 (MF422185)
114357
114440
+
Tyr
GTA
[ENA]
¡û
>W1511503169
JXHL01000058
Bacillota
Bacillus subtilis B4069 [JXHL]
92914
92997
+
Tyr
GTA
[ENA]
¡û
>W1511503348
JXHO01000031
Bacillota
Bacillus subtilis B4072 [JXHO]
5429
5346
-
Tyr
GTA
[ENA]
¡û
Identical group No.89380 (1 seq.)
>PHG182000032
KY368640
Herelleviridae
Bacillus phage vB_BsuM-Goe3 (KY368640)
33266
33349
+
Tyr
GTA
[ENA]
¡û
Identical group No.99044 (1 seq.)
>PHG182000079
MH606185
Herelleviridae
Bacillus phage BSP38 (MH606185)
33417
33500
+
Tyr
GTA
[ENA]
¡û
Identical group No.122079 (4 seq.)
>PHG181005961
MF498901
Herelleviridae
Bacillus phage Anthony (MF498901)
33671
33754
+
Tyr
GTA
[ENA]
¡û
>PHG14102881
KJ489397
Myoviridae
Bacillus phage CAM003 GT7 (KJ489397)
33334
33417
+
Tyr
GTA
[ENA]
¡û
>PHG14102888
KJ489398
Myoviridae
Bacillus phage Evoli GT7 (KJ489398)
33065
33148
+
Tyr
GTA
[ENA]
¡û
>PHG14102895
KJ489400
Myoviridae
Bacillus phage Hoody T GT7 (KJ489400)
33155
33238
+
Tyr
GTA
[ENA]
¡û
Identical group No.122080 (8 seq.)
>PHG182000015
KT319610
Herelleviridae
Listeria phage WIL-3 (KT319610)
1754
1835
+
Tyr
GTA
[ENA]
¡û
>PHG14102701
KJ094029
Myoviridae
Listeria phage LP-064 RIP1 (KJ094029)
39383
39302
-
Tyr
GTA
[ENA]
¡û
>PHG14102717
KJ094030
Myoviridae
Listeria phage LP-083-2 RIP1 (KJ094030)
36049
35968
-
Tyr
GTA
[ENA]
¡û
>PHG14102919
KJ535722
Myoviridae
Listeria phage LMSP-25 (KJ535722)
45283
45202
-
Tyr
GTA
[ENA]
¡û
>PHG14102937
KJ586794
Myoviridae
Listeria phage LMTA-34 LMSP-25 (KJ586794)
45283
45202
-
Tyr
GTA
[ENA]
¡û
>PHG14102950
KJ586795
Myoviridae
Listeria phage LMTA-94 LMSP-25 (KJ586795)
102045
102126
+
Tyr
GTA
[ENA]
¡û
>PHG14102972
KJ591605
Myoviridae
Listeria phage LMTA-57 LMSP-25 (KJ591605)
112437
112518
+
Tyr
GTA
[ENA]
¡û
>PHG14103132
KM373208
Myoviridae
Listeria phage WIL-1 81 (KM373208)
2121
2202
+
Tyr
GTA
[ENA]
¡û
Identical group No.124516 (5 seq.)
>PHG181002324
KU737346
Herelleviridae
Bacillus phage Vinny (KU737346)
33670
33753
+
Tyr
GTA
[ENA]
¡û
>PHG181005162
MF288921
Herelleviridae
Bacillus phage OTooleKemple52 (MF288921)
32723
32806
+
Tyr
GTA
[ENA]
¡û
>PHG181005168
MF288922
Herelleviridae
Bacillus phage Janet (MF288922)
33405
33488
+
Tyr
GTA
[ENA]
¡û
>PHG181008446
MH538296
Herelleviridae
Bacillus phage Maceta (MH538296)
43653
43570
-
Tyr
GTA
[ENA]
¡û
>PHG14100994
JF966203
Myoviridae
Bacillus phage Bastille KSSJEB (JF966203)
7235
7318
+
Tyr
GTA
[ENA]
¡û
Identical group No.126688 (2 seq.)
>PHG186000028
AP018714
Herelleviridae
Enterococcus phage phiEF17H (AP018714)
138749
138668
-
Tyr
GTA
[ENA]
¡û
>PHG186000029
AP018715
Herelleviridae
Enterococcus phage phiM1EF22 (AP018715)
137694
137613
-
Tyr
GTA
[ENA]
¡û
Identical group No.149085 (1 seq.)
>PHG181003704
KX961630
Herelleviridae
Bacillus phage QCM8 (KX961630)
28506
28588
+
Tyr
GTA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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