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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Herelleviridae
Anticodon = GTA
HIT:
6 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.123654 (6 seq.)
>WENV170965947
MTEV01010486
[MTEV] soil metagenome; soil bioaugmentation with soil previously exposed to atrazine
412
326
-
Tyr
GTA
[ENA]
¢þ
>PHG181001428
KT187252
Herelleviridae
Bacillus phage PBC6 (KT187252)
513
427
-
Tyr
GTA
[ENA]
¡û
>PHG181003723
KX987999
Herelleviridae
Bacillus phage BCP12 (KX987999)
125652
125566
-
Tyr
GTA
[ENA]
¡û
>PHG14101343
JN797797
Myoviridae
Bacillus phage BCP78 Bongo (JN797797)
599
513
-
Tyr
GTA
[ENA]
¡û
>W1911299591
NTUQ01000021
Bacillota
Bacillus cereus AFS015717 [NTUQ]
96351
96437
+
Tyr
GTA
[ENA]
¡û
>W1511536595
JYPL01000109
Bacillota
Bacillus cereus HWW 274-2 [JYPL]
122622
122536
-
Tyr
GTA
[ENA]
¡û
Identical group No.126442 (2 seq.)
>PHG181001449
KT224359
Herelleviridae
Bacillus phage TsarBomba (KT224359)
28586
28672
+
Tyr
GTA
[ENA]
¡û
>PHG14101359
JN797798
Myoviridae
Bacillus phage BCU4 Bongo (JN797798)
148585
148499
-
Tyr
GTA
[ENA]
¡û
Identical group No.131886 (3 seq.)
>PHG182000050
LT960608
Herelleviridae
Bacillus phage SBSphiJ (LT960608)
44056
44139
+
Tyr
GTA
[ENA]
¡û
>W1511503169
JXHL01000058
Bacillota
Bacillus subtilis B4069 [JXHL]
92914
92997
+
Tyr
GTA
[ENA]
¡û
>W1511503348
JXHO01000031
Bacillota
Bacillus subtilis B4072 [JXHO]
5429
5346
-
Tyr
GTA
[ENA]
¡û
Identical group No.186026 (4 seq.)
>PHG181005961
MF498901
Herelleviridae
Bacillus phage Anthony (MF498901)
33671
33754
+
Tyr
GTA
[ENA]
¡û
>PHG14102881
KJ489397
Myoviridae
Bacillus phage CAM003 GT7 (KJ489397)
33334
33417
+
Tyr
GTA
[ENA]
¡û
>PHG14102888
KJ489398
Myoviridae
Bacillus phage Evoli GT7 (KJ489398)
33065
33148
+
Tyr
GTA
[ENA]
¡û
>PHG14102895
KJ489400
Myoviridae
Bacillus phage Hoody T GT7 (KJ489400)
33155
33238
+
Tyr
GTA
[ENA]
¡û
Identical group No.189804 (4 seq.)
>PHG181002324
KU737346
Herelleviridae
Bacillus phage Vinny (KU737346)
33670
33753
+
Tyr
GTA
[ENA]
¡û
>PHG181005168
MF288922
Herelleviridae
Bacillus phage Janet (MF288922)
33405
33488
+
Tyr
GTA
[ENA]
¡û
>PHG181008446
MH538296
Herelleviridae
Bacillus phage Maceta (MH538296)
43653
43570
-
Tyr
GTA
[ENA]
¡û
>PHG14100994
JF966203
Myoviridae
Bacillus phage Bastille KSSJEB (JF966203)
7235
7318
+
Tyr
GTA
[ENA]
¡û
Identical group No.193281 (9 seq.)
>PHG0100398
DQ004855
Myoviridae
Listeria virus P100 T4dC-46 (DQ004855)
127798
127717
-
Tyr
GTA
[ENA]
¡û
>PHG182000013
KT319598
Myoviridae
Listeria phage WIL-2 (KT319598)
1833
1914
+
Tyr
GTA
[ENA]
¡û
>PHG182000015
KT319610
Herelleviridae
Listeria phage WIL-3 (KT319610)
1754
1835
+
Tyr
GTA
[ENA]
¡û
>PHG14101783
JX126918
Myoviridae
Listeria phage LP-125 Lu11 (JX126918)
39382
39301
-
Tyr
GTA
[ENA]
¡û
>PHG14102701
KJ094029
Myoviridae
Listeria phage LP-064 RIP1 (KJ094029)
39383
39302
-
Tyr
GTA
[ENA]
¡û
>PHG14102717
KJ094030
Myoviridae
Listeria phage LP-083-2 RIP1 (KJ094030)
36049
35968
-
Tyr
GTA
[ENA]
¡û
>PHG14102733
KJ094031
Myoviridae
Listeria phage LP-124 RIP1 (KJ094031)
133934
133853
-
Tyr
GTA
[ENA]
¡û
>PHG14102903
KJ535721
Myoviridae
Listeria phage List-36 (KJ535721)
99128
99209
+
Tyr
GTA
[ENA]
¡û
>PHG14103132
KM373208
Myoviridae
Listeria phage WIL-1 81 (KM373208)
2121
2202
+
Tyr
GTA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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