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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Herelleviridae
Anticodon = GTC
HIT:
19 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.266189 (2 seq.)
>WENV170560018
CYGL01000015
[CYGL] human gut metagenome;
49473
49549
+
Asp
GTC
[ENA]
¢þ
>PHG181000869
KP339049
Herelleviridae
Enterococcus phage EFDG1 (KP339049)
52669
52593
-
Asp
GTC
[ENA]
¡û
Identical group No.271553 (34 seq.)
>PHG0100227
AY176327
Myoviridae
Staphylococcus virus K PaP3 (AY176327)
30601
30526
-
Asp
GTC
[ENA]
¡û
>PHG0100343
AY954969
Myoviridae
Staphylococcus virus G1 phi812b (AY954969)
134101
134026
-
Asp
GTC
[ENA]
¡û
>PHG181000058
AP018375
Herelleviridae
Staphylococcus phage phiSA039 (AP018375)
27334
27259
-
Asp
GTC
[ENA]
¡û
>PHG181000684
KJ206559
Herelleviridae
Staphylococcus phage 812 (KJ206559)
37848
37773
-
Asp
GTC
[ENA]
¡û
>PHG181000687
KJ206560
Herelleviridae
Staphylococcus phage 812 (KJ206560)
37883
37808
-
Asp
GTC
[ENA]
¡û
>PHG181000690
KJ206561
Herelleviridae
Staphylococcus phage 812 (KJ206561)
37815
37740
-
Asp
GTC
[ENA]
¡û
>PHG181000693
KJ206562
Herelleviridae
Staphylococcus phage 812 (KJ206562)
36361
36286
-
Asp
GTC
[ENA]
¡û
>PHG181000696
KJ206563
Herelleviridae
Staphylococcus phage 812 (KJ206563)
36374
36299
-
Asp
GTC
[ENA]
¡û
>PHG181000978
KP687431
Herelleviridae
Staphylococcus phage IME-SA1 (KP687431)
11003
10928
-
Asp
GTC
[ENA]
¡û
>PHG181000980
KP687432
Herelleviridae
Staphylococcus phage IME-SA2 (KP687432)
29346
29271
-
Asp
GTC
[ENA]
¡û
>PHG181001334
KR902361
Herelleviridae
Staphylococcus phage IME-SA118 (KR902361)
44097
44022
-
Asp
GTC
[ENA]
¡û
>PHG181001338
KR908644
Herelleviridae
Staphylococcus phage IME-SA119 (KR908644)
7628
7703
+
Asp
GTC
[ENA]
¡û
>PHG181004191
KY581279
Herelleviridae
Staphylococcus phage pSa-3 (KY581279)
35051
34976
-
Asp
GTC
[ENA]
¡û
>PHG181005568
MF398190
Herelleviridae
Staphylococcus phage vB_SauM-fRuSau02 (MF398190)
38199
38124
-
Asp
GTC
[ENA]
¡û
>PHG181005616
MF405094
Herelleviridae
Staphylococcus phage JA1 Staphylococcus aureus CIT281189 (MF405094)
37773
37698
-
Asp
GTC
[ENA]
¡û
>PHG181007058
MG656408
Herelleviridae
Staphylococcus phage B1 Staphylococcus aureus DPC5246 (MG656408)
38200
38125
-
Asp
GTC
[ENA]
¡û
>PHG181007183
MG721208
Herelleviridae
Staphylococcus phage vB_SauM_LM12 (MG721208)
108855
108930
+
Asp
GTC
[ENA]
¡û
>PHG181007787
MH107769
Herelleviridae
Staphylococcus phage vB_SauM_0414_108 (MH107769)
37589
37514
-
Asp
GTC
[ENA]
¡û
>PHG181007790
MH136584
Herelleviridae
Staphylococcus phage HYZ21 (MH136584)
28664
28589
-
Asp
GTC
[ENA]
¡û
>PHG14100018
AB903967
Myoviridae
Staphylococcus phage phiSA12 phiSA012 (AB903967)
30497
30422
-
Asp
GTC
[ENA]
¡û
>PHG14100048
EU418428
Myoviridae
Staphylococcus phage A5W PAS39 (EU418428)
37651
37576
-
Asp
GTC
[ENA]
¡û
>PHG14100190
FR852584
Myoviridae
Staphylococcus phage ISP ATCC 35860-B1 (FR852584)
134105
134030
-
Asp
GTC
[ENA]
¡û
>PHG14100579
HQ163896
Myoviridae
Staphylococcus phage Sb-1 Aabphi01 (HQ163896)
30580
30505
-
Asp
GTC
[ENA]
¡û
>PHG14101616
JX080300
Myoviridae
Staphylococcus phage Staph1N Lu11 (JX080300)
37648
37573
-
Asp
GTC
[ENA]
¡û
>PHG14101619
JX080301
Myoviridae
Staphylococcus phage A3R Lu11 (JX080301)
37523
37448
-
Asp
GTC
[ENA]
¡û
>PHG14101622
JX080302
Myoviridae
Staphylococcus phage 676Z Lu11 (JX080302)
38570
38495
-
Asp
GTC
[ENA]
¡û
>PHG14101625
JX080303
Myoviridae
Staphylococcus phage Fi200W Lu11 (JX080303)
38526
38451
-
Asp
GTC
[ENA]
¡û
>PHG14101628
JX080304
Myoviridae
Staphylococcus phage MSA6 Lu11 (JX080304)
38168
38093
-
Asp
GTC
[ENA]
¡û
>PHG14101631
JX080305
Myoviridae
Staphylococcus phage P4W Lu11 (JX080305)
37628
37553
-
Asp
GTC
[ENA]
¡û
>PHG14101980
JX875065
Myoviridae
Staphylococcus phage SA5 Pseudomonas putida GB-1 (JX875065)
33538
33613
+
Asp
GTC
[ENA]
¡û
>PHG14101984
JX878671
Myoviridae
Staphylococcus phage JD007 Pseudomonas putida GB-1 (JX878671)
50343
50418
+
Asp
GTC
[ENA]
¡û
>PHG14101998
KC012913
Myoviridae
Staphylococcus phage Team1 TN106 (KC012913)
38185
38110
-
Asp
GTC
[ENA]
¡û
>PHG14102634
KF766114
Myoviridae
Staphylococcus virus K Klebsiella pneumoniae (KF766114)
37679
37604
-
Asp
GTC
[ENA]
¡û
>PHG14103033
KJ888149
Myoviridae
Staphylococcus phage MCE-2014 IB4755 (KJ888149)
38946
38871
-
Asp
GTC
[ENA]
¡û
Identical group No.297332 (12 seq.)
>WENV180044260
MAVC01001032
[MAVC] viral metagenome; DNA from tracheal sample collected at farm Jay, Vaghasi
149
74
-
Asp
GTC
[ENA]
¢þ
>WENV180044287
MAVF01001032
[MAVF] viral metagenome; DNA from tracheal sample collected at farm S.K, Petlad
149
74
-
Asp
GTC
[ENA]
¢þ
>PHG181000815
KP027446
Herelleviridae
Staphylococcus phage phiIPLA-RODI (KP027446)
31049
30974
-
Asp
GTC
[ENA]
¡û
>PHG181004346
KY779849
Herelleviridae
Staphylococcus phage qdsa002 (KY779849)
41370
41295
-
Asp
GTC
[ENA]
¡û
>PHG181004388
KY794641
Herelleviridae
Staphylococcus phage vB_Sau_CG (KY794641)
138687
138612
-
Asp
GTC
[ENA]
¡û
>PHG181004391
KY794642
Herelleviridae
Staphylococcus phage vB_Sau_Clo6 (KY794642)
139547
139472
-
Asp
GTC
[ENA]
¡û
>PHG181004392
KY794643
Herelleviridae
Staphylococcus phage vB_Sau_S24 (KY794643)
135806
135731
-
Asp
GTC
[ENA]
¡û
>PHG181004865
MF001365
Herelleviridae
Staphylococcus phage SA3 (MF001365)
10846
10771
-
Asp
GTC
[ENA]
¡û
>PHG14100013
AB853330
Myoviridae
Staphylococcus phage S25-3 (AB853330)
35895
35820
-
Asp
GTC
[ENA]
¡û
>PHG14100016
AB853331
Myoviridae
Staphylococcus phage S25-4 (AB853331)
40762
40687
-
Asp
GTC
[ENA]
¡û
>PHG14101507
JQ686190
Myoviridae
Staphylococcus phage GH15 DEC5E (JQ686190)
38002
37927
-
Asp
GTC
[ENA]
¡û
>PHG14103064
KM216423
Myoviridae
Staphylococcus phage P108 LIKBL0011 (KM216423)
116825
116750
-
Asp
GTC
[ENA]
¡û
Identical group No.489578 (5 seq.)
>WENV182597999
OJJD01000051
[OJJD] metagenome; faeces
106596
106671
+
Asp
GTC
[ENA]
¢þ
>PHG0100193
AP009390
Myoviridae
Enterococcus phage phiEF24C (AP009390)
139554
139479
-
Asp
GTC
[ENA]
¡û
>PHG181000129
AP018715
Herelleviridae
Enterococcus phage phiM1EF22 (AP018715)
140521
140446
-
Asp
GTC
[ENA]
¡û
>PHG14100003
AB609718
Myoviridae
Enterococcus phage phiEF24C-P2 (AB609718)
139554
139479
-
Asp
GTC
[ENA]
¡û
>PHG14103028
KJ801817
Myoviridae
Enterococcus phage ECP3 IB4755 (KJ801817)
100086
100161
+
Asp
GTC
[ENA]
¡û
Identical group No.523498 (1 seq.)
>PHG181000122
AP018714
Herelleviridae
Enterococcus phage phiEF17H (AP018714)
141115
141040
-
Asp
GTC
[ENA]
¡û
Identical group No.672103 (6 seq.)
>PHG181005160
MF288921
Herelleviridae
Bacillus phage OTooleKemple52 (MF288921)
32343
32416
+
Asp
GTC
[ENA]
¡û
>PHG181005166
MF288922
Herelleviridae
Bacillus phage Janet (MF288922)
33103
33176
+
Asp
GTC
[ENA]
¡û
>PHG181008444
MH538296
Herelleviridae
Bacillus phage Maceta (MH538296)
43955
43882
-
Asp
GTC
[ENA]
¡û
>PHG14102880
KJ489397
Myoviridae
Bacillus phage CAM003 GT7 (KJ489397)
33032
33105
+
Asp
GTC
[ENA]
¡û
>PHG14102887
KJ489398
Myoviridae
Bacillus phage Evoli GT7 (KJ489398)
32763
32836
+
Asp
GTC
[ENA]
¡û
>PHG14102894
KJ489400
Myoviridae
Bacillus phage Hoody T GT7 (KJ489400)
32853
32926
+
Asp
GTC
[ENA]
¡û
Identical group No.684220 (1 seq.)
>PHG181000715
KJ676859
Herelleviridae
Bacillus phage JBP901 (KJ676859)
157655
157582
-
Asp
GTC
[ENA]
¡û
Identical group No.695877 (7 seq.)
>PHG181001504
KT319598
Myoviridae
Listeria phage WIL-2 (KT319598)
850
922
+
Asp
GTC
[ENA]
¡û
>PHG181001518
KT319610
Herelleviridae
Listeria phage WIL-3 (KT319610)
771
843
+
Asp
GTC
[ENA]
¡û
>PHG14101781
JX126918
Myoviridae
Listeria phage LP-125 Lu11 (JX126918)
40365
40293
-
Asp
GTC
[ENA]
¡û
>PHG14102699
KJ094029
Myoviridae
Listeria phage LP-064 RIP1 (KJ094029)
40366
40294
-
Asp
GTC
[ENA]
¡û
>PHG14102715
KJ094030
Myoviridae
Listeria phage LP-083-2 RIP1 (KJ094030)
37032
36960
-
Asp
GTC
[ENA]
¡û
>PHG14102731
KJ094031
Myoviridae
Listeria phage LP-124 RIP1 (KJ094031)
134917
134845
-
Asp
GTC
[ENA]
¡û
>PHG14103130
KM373208
Myoviridae
Listeria phage WIL-1 81 (KM373208)
1138
1210
+
Asp
GTC
[ENA]
¡û
Identical group No.697171 (4 seq.)
>PHG181004755
LT960608
Herelleviridae
Bacillus phage SBSphiJ (LT960608)
43817
43890
+
Asp
GTC
[ENA]
¡û
>PHG181005621
MF422185
Herelleviridae
Bacillus phage BSP10 (MF422185)
114118
114191
+
Asp
GTC
[ENA]
¡û
>PHG14100023
AB930182
Myoviridae
Bacillus phage SPG24 (AB930182)
110903
110976
+
Asp
GTC
[ENA]
¡û
>PHG14100046
AP013029
Myoviridae
Bacillus phage phiNIT1 (AP013029)
35511
35584
+
Asp
GTC
[ENA]
¡û
Identical group No.703722 (8 seq.)
>PHG181002328
KU737348
Herelleviridae
Bacillus phage Zuko (KU737348)
33938
34011
+
Asp
GTC
[ENA]
¡û
>PHG181002331
KU737349
Herelleviridae
Bacillus phage DIGNKC (KU737349)
33354
33427
+
Asp
GTC
[ENA]
¡û
>PHG181002588
KX147229
Herelleviridae
Bacillus phage Belinda (KX147229)
33388
33461
+
Asp
GTC
[ENA]
¡û
>PHG181003695
KX961629
Herelleviridae
Bacillus phage BJ4 (KX961629)
32415
32488
+
Asp
GTC
[ENA]
¡û
>PHG181003710
KX961632
Herelleviridae
Bacillus phage SBP8a (KX961632)
32849
32922
+
Asp
GTC
[ENA]
¡û
>PHG181005156
MF288919
Herelleviridae
Bacillus phage AaronPhadgers (MF288919)
33511
33584
+
Asp
GTC
[ENA]
¡û
>PHG181007248
MG763894
Herelleviridae
Bacillus phage HonestAbe (MG763894)
33152
33225
+
Asp
GTC
[ENA]
¡û
>PHG181008439
MH538193
Herelleviridae
Bacillus phage Saddex (MH538193)
33683
33756
+
Asp
GTC
[ENA]
¡û
Identical group No.719278 (1 seq.)
>PHG181002346
KU847400
Herelleviridae
Bacillus phage Crookii (KU847400)
10333
10406
+
Asp
GTC
[ENA]
¡û
Identical group No.725985 (1 seq.)
>PHG181003959
KY368640
Herelleviridae
Bacillus phage vB_BsuM-Goe3 (KY368640)
32787
32860
+
Asp
GTC
[ENA]
¡û
Identical group No.755888 (1 seq.)
>PHG181002083
KU577463
Herelleviridae
Bacillus phage Deep Blue (KU577463)
142183
142110
-
Asp
GTC
[ENA]
¡û
Identical group No.775015 (1 seq.)
>PHG181008698
MH606185
Herelleviridae
Bacillus phage BSP38 (MH606185)
32939
33012
+
Asp
GTC
[ENA]
¡û
Identical group No.793240 (4 seq.)
>PHG181000673
KJ081346
Herelleviridae
Bacillus phage BCP8-2 (KJ081346)
35909
35836
-
Asp
GTC
[ENA]
¡û
>PHG181000712
KJ676859
Herelleviridae
Bacillus phage JBP901 (KJ676859)
158535
158462
-
Asp
GTC
[ENA]
¡û
>PHG181003366
KX495186
Herelleviridae
Bacillus phage PK16 (KX495186)
157035
156962
-
Asp
GTC
[ENA]
¡û
>PHG14102827
KJ451625
Myoviridae
Bacillus phage Bcp1 TahiMoana (KJ451625)
31170
31243
+
Asp
GTC
[ENA]
¡û
Identical group No.794748 (2 seq.)
>WENV170965938
MTEV01010486
[MTEV] soil metagenome; soil bioaugmentation with soil previously exposed to atrazine
1887
1815
-
Asp
GTC
[ENA]
¢þ
>PHG181003699
KX961630
Herelleviridae
Bacillus phage QCM8 (KX961630)
27434
27506
+
Asp
GTC
[ENA]
¡û
Identical group No.798534 (3 seq.)
>PHG181001440
KT224359
Herelleviridae
Bacillus phage TsarBomba (KT224359)
27166
27238
+
Asp
GTC
[ENA]
¡û
>PHG181003714
KX987999
Herelleviridae
Bacillus phage BCP12 (KX987999)
127008
126936
-
Asp
GTC
[ENA]
¡û
>PHG14101334
JN797797
Myoviridae
Bacillus phage BCP78 Bongo (JN797797)
1955
1883
-
Asp
GTC
[ENA]
¡û
Identical group No.820584 (1 seq.)
>PHG181001420
KT187252
Herelleviridae
Bacillus phage PBC6 (KT187252)
2057
1984
-
Asp
GTC
[ENA]
¡û
Identical group No.833168 (1 seq.)
>PHG181001911
KT995480
Herelleviridae
Bacillus virus BM15 (KT995480)
29517
29590
+
Asp
GTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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