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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Herelleviridae
Anticodon = GTG
HIT:
7 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.318899 (1 seq.)
>PHG181000720
KJ676859
Herelleviridae
Bacillus phage JBP901 (KJ676859)
156982
156909
-
His
GTG
[ENA]
¡û
Identical group No.397512 (1 seq.)
>PHG181000679
KJ081346
Herelleviridae
Bacillus phage BCP8-2 (KJ081346)
34550
34477
-
His
GTG
[ENA]
¡û
Identical group No.415251 (3 seq.)
>PHG181001916
KT995480
Herelleviridae
Bacillus virus BM15 (KT995480)
30168
30241
+
His
GTG
[ENA]
¡û
>PHG181003372
KX495186
Herelleviridae
Bacillus phage PK16 (KX495186)
155441
155368
-
His
GTG
[ENA]
¡û
>PHG14102833
KJ451625
Myoviridae
Bacillus phage Bcp1 TahiMoana (KJ451625)
32007
32080
+
His
GTG
[ENA]
¡û
Identical group No.549160 (1 seq.)
>PHG181003702
KX961630
Herelleviridae
Bacillus phage QCM8 (KX961630)
28051
28123
+
His
GTG
[ENA]
¡û
Identical group No.695876 (4 seq.)
>PHG181001425
KT187252
Herelleviridae
Bacillus phage PBC6 (KT187252)
960
888
-
His
GTG
[ENA]
¡û
>PHG181001446
KT224359
Herelleviridae
Bacillus phage TsarBomba (KT224359)
28106
28178
+
His
GTG
[ENA]
¡û
>PHG181003720
KX987999
Herelleviridae
Bacillus phage BCP12 (KX987999)
126171
126100
-
His
GTG
[ENA]
¡û
>PHG14101340
JN797797
Myoviridae
Bacillus phage BCP78 Bongo (JN797797)
1118
1047
-
His
GTG
[ENA]
¡û
Identical group No.813824 (4 seq.)
>WENV180278762
OBHX01007844
[OBHX] metagenome; feces
1386
1456
+
His
GTG
[ENA]
¢þ
>WENV180349133
OBLO01023687
[OBLO] metagenome; feces
429
359
-
His
GTG
[ENA]
¢þ
>WENV170560030
CYGL01000015
[CYGL] human gut metagenome;
53512
53582
+
His
GTG
[ENA]
¢þ
>PHG181000881
KP339049
Herelleviridae
Enterococcus phage EFDG1 (KP339049)
48329
48259
-
His
GTG
[ENA]
¡û
Identical group No.825942 (1 seq.)
>PHG181002089
KU577463
Herelleviridae
Bacillus phage Deep Blue (KU577463)
141261
141191
-
His
GTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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