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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Herelleviridae
Anticodon = TAG
HIT:
10 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.59336 (4 seq.)
>WENV182598002
OJJD01000051
[OJJD] metagenome; faeces
108125
108209
+
Leu
TAG
[ENA]
¢þ
>PHG0200014
AP009390
Myoviridae
Enterococcus phage phiEF24C (AP009390)
137761
137677
-
Leu
TAG
[ENA]
¡û
>PHG181000125
AP018714
Herelleviridae
Enterococcus phage phiEF17H (AP018714)
139434
139350
-
Leu
TAG
[ENA]
¡û
>PHG181000132
AP018715
Herelleviridae
Enterococcus phage phiM1EF22 (AP018715)
138727
138643
-
Leu
TAG
[ENA]
¡û
Identical group No.102756 (18 seq.)
>PHG0100381
DQ003638
Myoviridae
Listeria virus A511 T4dC-46 (DQ003638)
30367
30283
-
Leu
TAG
[ENA]
¡û
>PHG0100397
DQ004855
Myoviridae
Listeria virus P100 T4dC-46 (DQ004855)
128243
128159
-
Leu
TAG
[ENA]
¡û
>PHG181001505
KT319598
Myoviridae
Listeria phage WIL-2 (KT319598)
1388
1472
+
Leu
TAG
[ENA]
¡û
>PHG181001519
KT319610
Herelleviridae
Listeria phage WIL-3 (KT319610)
1309
1393
+
Leu
TAG
[ENA]
¡û
>PHG14101576
JQ797329
Myoviridae
Listeria phage vB_LmoM_AG20 Lu11 (JQ797329)
29723
29639
-
Leu
TAG
[ENA]
¡û
>PHG14101782
JX126918
Myoviridae
Listeria phage LP-125 Lu11 (JX126918)
39827
39743
-
Leu
TAG
[ENA]
¡û
>PHG14102700
KJ094029
Myoviridae
Listeria phage LP-064 RIP1 (KJ094029)
39828
39744
-
Leu
TAG
[ENA]
¡û
>PHG14102716
KJ094030
Myoviridae
Listeria phage LP-083-2 RIP1 (KJ094030)
36494
36410
-
Leu
TAG
[ENA]
¡û
>PHG14102732
KJ094031
Myoviridae
Listeria phage LP-124 RIP1 (KJ094031)
134379
134295
-
Leu
TAG
[ENA]
¡û
>PHG14102749
KJ094033
Myoviridae
Listeria phage LP-048 RIP1 (KJ094033)
32313
32229
-
Leu
TAG
[ENA]
¡û
>PHG14102902
KJ535721
Myoviridae
Listeria phage List-36 (KJ535721)
98683
98767
+
Leu
TAG
[ENA]
¡û
>PHG14102918
KJ535722
Myoviridae
Listeria phage LMSP-25 (KJ535722)
45728
45644
-
Leu
TAG
[ENA]
¡û
>PHG14102936
KJ586794
Myoviridae
Listeria phage LMTA-34 LMSP-25 (KJ586794)
45728
45644
-
Leu
TAG
[ENA]
¡û
>PHG14102949
KJ586795
Myoviridae
Listeria phage LMTA-94 LMSP-25 (KJ586795)
101600
101684
+
Leu
TAG
[ENA]
¡û
>PHG14102962
KJ591604
Myoviridae
Listeria phage LMTA-148 LMSP-25 (KJ591604)
37801
37717
-
Leu
TAG
[ENA]
¡û
>PHG14102971
KJ591605
Myoviridae
Listeria phage LMTA-57 LMSP-25 (KJ591605)
111992
112076
+
Leu
TAG
[ENA]
¡û
>PHG14103015
KJ668715
Myoviridae
Listeria phage LMTA-34 IB4755 (KJ668715)
88464
88548
+
Leu
TAG
[ENA]
¡û
>PHG14103131
KM373208
Myoviridae
Listeria phage WIL-1 81 (KM373208)
1676
1760
+
Leu
TAG
[ENA]
¡û
Identical group No.108549 (1 seq.)
>PHG181003705
KX961630
Herelleviridae
Bacillus phage QCM8 (KX961630)
28594
28679
+
Leu
TAG
[ENA]
¡û
Identical group No.112290 (1 seq.)
>PHG181000682
KJ081346
Herelleviridae
Bacillus phage BCP8-2 (KJ081346)
33791
33706
-
Leu
TAG
[ENA]
¡û
Identical group No.124510 (2 seq.)
>WENV170965952
MTEV01010523
[MTEV] soil metagenome; soil bioaugmentation with soil previously exposed to atrazine
244
328
+
Leu
TAG
[ENA]
¢þ
>PHG181000723
KJ676859
Herelleviridae
Bacillus phage JBP901 (KJ676859)
156291
156207
-
Leu
TAG
[ENA]
¡û
Identical group No.134737 (4 seq.)
>WENV170965326
MTEU01000595
[MTEU] soil metagenome; naturally attenuated soil
3114
3030
-
Leu
TAG
[ENA]
¢þ
>WENV170966190
MTEX01003701
[MTEX] soil metagenome; soil biostimulated with molasses as carbon source
15173
15089
-
Leu
TAG
[ENA]
¢þ
>PHG181001920
KT995480
Herelleviridae
Bacillus virus BM15 (KT995480)
30850
30934
+
Leu
TAG
[ENA]
¡û
>PHG181003376
KX495186
Herelleviridae
Bacillus phage PK16 (KX495186)
154762
154678
-
Leu
TAG
[ENA]
¡û
Identical group No.158650 (9 seq.)
>PHG181002323
KU737346
Herelleviridae
Bacillus phage Vinny (KU737346)
33586
33663
+
Leu
TAG
[ENA]
¡û
>PHG181005161
MF288921
Herelleviridae
Bacillus phage OTooleKemple52 (MF288921)
32639
32716
+
Leu
TAG
[ENA]
¡û
>PHG181005167
MF288922
Herelleviridae
Bacillus phage Janet (MF288922)
33321
33398
+
Leu
TAG
[ENA]
¡û
>PHG181005960
MF498901
Herelleviridae
Bacillus phage Anthony (MF498901)
33587
33664
+
Leu
TAG
[ENA]
¡û
>PHG181008445
MH538296
Herelleviridae
Bacillus phage Maceta (MH538296)
43737
43660
-
Leu
TAG
[ENA]
¡û
>PHG14200071
JF966203
Myoviridae
Bacillus phage Bastille KSSJEB (JF966203)
7151
7228
+
Leu
TAG
[ENA]
¡û
>PHG14200221
KJ489397
Myoviridae
Bacillus phage CAM003 GT7 (KJ489397)
33250
33327
+
Leu
TAG
[ENA]
¡û
>PHG14200222
KJ489398
Myoviridae
Bacillus phage Evoli GT7 (KJ489398)
32981
33058
+
Leu
TAG
[ENA]
¡û
>PHG14200223
KJ489400
Myoviridae
Bacillus phage Hoody T GT7 (KJ489400)
33071
33148
+
Leu
TAG
[ENA]
¡û
Identical group No.249993 (2 seq.)
>WENV180278764
OBHX01007844
[OBHX] metagenome; feces
1803
1877
+
Leu
TAG
[ENA]
¢þ
>PHG181000883
KP339049
Herelleviridae
Enterococcus phage EFDG1 (KP339049)
47355
47280
-
Leu
TAG
[ENA]
¡û
Identical group No.318706 (5 seq.)
>WENV170965949
MTEV01010486
[MTEV] soil metagenome; soil bioaugmentation with soil previously exposed to atrazine
145
71
-
Leu
TAG
[ENA]
¢þ
>PHG181001451
KT224359
Herelleviridae
Bacillus phage TsarBomba (KT224359)
28854
28929
+
Leu
TAG
[ENA]
¡û
>PHG181003725
KX987999
Herelleviridae
Bacillus phage BCP12 (KX987999)
125380
125306
-
Leu
TAG
[ENA]
¡û
>PHG14101345
JN797797
Myoviridae
Bacillus phage BCP78 Bongo (JN797797)
327
253
-
Leu
TAG
[ENA]
¡û
>PHG14101361
JN797798
Myoviridae
Bacillus phage BCU4 Bongo (JN797798)
148313
148239
-
Leu
TAG
[ENA]
¡û
Identical group No.380539 (1 seq.)
>PHG181002093
KU577463
Herelleviridae
Bacillus phage Deep Blue (KU577463)
140575
140500
-
Leu
TAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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