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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Herelleviridae
Anticodon = TAG
HIT:
6 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.91231 (2 seq.)
>PHG0200014
AP009390
Myoviridae
Enterococcus phage phiEF24C (AP009390)
137761
137677
-
Leu
TAG
[ENA]
¡û
>PHG181000132
AP018715
Herelleviridae
Enterococcus phage phiM1EF22 (AP018715)
138727
138643
-
Leu
TAG
[ENA]
¡û
Identical group No.162461 (8 seq.)
>PHG181001505
KT319598
Myoviridae
Listeria phage WIL-2 (KT319598)
1388
1472
+
Leu
TAG
[ENA]
¡û
>PHG181001519
KT319610
Herelleviridae
Listeria phage WIL-3 (KT319610)
1309
1393
+
Leu
TAG
[ENA]
¡û
>PHG14101782
JX126918
Myoviridae
Listeria phage LP-125 Lu11 (JX126918)
39827
39743
-
Leu
TAG
[ENA]
¡û
>PHG14102700
KJ094029
Myoviridae
Listeria phage LP-064 RIP1 (KJ094029)
39828
39744
-
Leu
TAG
[ENA]
¡û
>PHG14102716
KJ094030
Myoviridae
Listeria phage LP-083-2 RIP1 (KJ094030)
36494
36410
-
Leu
TAG
[ENA]
¡û
>PHG14102732
KJ094031
Myoviridae
Listeria phage LP-124 RIP1 (KJ094031)
134379
134295
-
Leu
TAG
[ENA]
¡û
>PHG14102902
KJ535721
Myoviridae
Listeria phage List-36 (KJ535721)
98683
98767
+
Leu
TAG
[ENA]
¡û
>PHG14103131
KM373208
Myoviridae
Listeria phage WIL-1 81 (KM373208)
1676
1760
+
Leu
TAG
[ENA]
¡û
Identical group No.189791 (2 seq.)
>WENV170965952
MTEV01010523
[MTEV] soil metagenome; soil bioaugmentation with soil previously exposed to atrazine
244
328
+
Leu
TAG
[ENA]
¢þ
>PHG181000723
KJ676859
Herelleviridae
Bacillus phage JBP901 (KJ676859)
156291
156207
-
Leu
TAG
[ENA]
¡û
Identical group No.207220 (4 seq.)
>WENV170965326
MTEU01000595
[MTEU] soil metagenome; naturally attenuated soil
3114
3030
-
Leu
TAG
[ENA]
¢þ
>WENV170966190
MTEX01003701
[MTEX] soil metagenome; soil biostimulated with molasses as carbon source
15173
15089
-
Leu
TAG
[ENA]
¢þ
>PHG181001920
KT995480
Herelleviridae
Bacillus virus BM15 (KT995480)
30850
30934
+
Leu
TAG
[ENA]
¡û
>PHG181003376
KX495186
Herelleviridae
Bacillus phage PK16 (KX495186)
154762
154678
-
Leu
TAG
[ENA]
¡û
Identical group No.244374 (8 seq.)
>PHG181002323
KU737346
Herelleviridae
Bacillus phage Vinny (KU737346)
33586
33663
+
Leu
TAG
[ENA]
¡û
>PHG181005161
MF288921
Herelleviridae
Bacillus phage OTooleKemple52 (MF288921)
32639
32716
+
Leu
TAG
[ENA]
¡û
>PHG181005167
MF288922
Herelleviridae
Bacillus phage Janet (MF288922)
33321
33398
+
Leu
TAG
[ENA]
¡û
>PHG181005960
MF498901
Herelleviridae
Bacillus phage Anthony (MF498901)
33587
33664
+
Leu
TAG
[ENA]
¡û
>PHG14200071
JF966203
Myoviridae
Bacillus phage Bastille KSSJEB (JF966203)
7151
7228
+
Leu
TAG
[ENA]
¡û
>PHG14200221
KJ489397
Myoviridae
Bacillus phage CAM003 GT7 (KJ489397)
33250
33327
+
Leu
TAG
[ENA]
¡û
>PHG14200222
KJ489398
Myoviridae
Bacillus phage Evoli GT7 (KJ489398)
32981
33058
+
Leu
TAG
[ENA]
¡û
>PHG14200223
KJ489400
Myoviridae
Bacillus phage Hoody T GT7 (KJ489400)
33071
33148
+
Leu
TAG
[ENA]
¡û
Identical group No.509722 (5 seq.)
>WENV170965949
MTEV01010486
[MTEV] soil metagenome; soil bioaugmentation with soil previously exposed to atrazine
145
71
-
Leu
TAG
[ENA]
¢þ
>PHG181001451
KT224359
Herelleviridae
Bacillus phage TsarBomba (KT224359)
28854
28929
+
Leu
TAG
[ENA]
¡û
>PHG181003725
KX987999
Herelleviridae
Bacillus phage BCP12 (KX987999)
125380
125306
-
Leu
TAG
[ENA]
¡û
>PHG14101345
JN797797
Myoviridae
Bacillus phage BCP78 Bongo (JN797797)
327
253
-
Leu
TAG
[ENA]
¡û
>PHG14101361
JN797798
Myoviridae
Bacillus phage BCU4 Bongo (JN797798)
148313
148239
-
Leu
TAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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