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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Herelleviridae
Anticodon = TCC
HIT:
6 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.318703 (4 seq.)
>WENV170965936
MTEV01010486
[MTEV] soil metagenome; soil bioaugmentation with soil previously exposed to atrazine
2049
1974
-
Gly
TCC
[ENA]
¢þ
>PHG181001438
KT224359
Herelleviridae
Bacillus phage TsarBomba (KT224359)
27005
27080
+
Gly
TCC
[ENA]
¡û
>PHG181003698
KX961630
Herelleviridae
Bacillus phage QCM8 (KX961630)
27354
27429
+
Gly
TCC
[ENA]
¡û
>PHG14101350
JN797798
Myoviridae
Bacillus phage BCU4 Bongo (JN797798)
150942
150870
-
Gly
TCC
[ENA]
¡û
Identical group No.328563 (4 seq.)
>PHG181001418
KT187252
Herelleviridae
Bacillus phage PBC6 (KT187252)
2218
2143
-
Gly
TCC
[ENA]
¡û
>PHG181003713
KX987999
Herelleviridae
Bacillus phage BCP12 (KX987999)
127088
127013
-
Gly
TCC
[ENA]
¡û
>PHG14101333
JN797797
Myoviridae
Bacillus phage BCP78 Bongo (JN797797)
2035
1960
-
Gly
TCC
[ENA]
¡û
>PHG14101636
JX094431
Myoviridae
Bacillus phage vB_BceM_Bc431v3 Lu11 (JX094431)
157821
157746
-
Gly
TCC
[ENA]
¡û
Identical group No.365738 (2 seq.)
>PHG183000022
KJ081346
Herelleviridae
Bacillus phage BCP8-2 (KJ081346)
35741
35666
-
Gly
TCC
[ENA]
¡û
>PHG183000484
KX495186
Herelleviridae
Bacillus phage PK16 (KX495186)
156867
156792
-
Gly
TCC
[ENA]
¡û
Identical group No.420832 (5 seq.)
>WENV170965313
MTEU01000595
[MTEU] soil metagenome; naturally attenuated soil
5364
5290
-
Gly
TCC
[ENA]
¢þ
>WENV170966177
MTEX01003701
[MTEX] soil metagenome; soil biostimulated with molasses as carbon source
17423
17349
-
Gly
TCC
[ENA]
¢þ
>PHG181000711
KJ676859
Herelleviridae
Bacillus phage JBP901 (KJ676859)
158614
158540
-
Gly
TCC
[ENA]
¡û
>PHG181002082
KU577463
Herelleviridae
Bacillus phage Deep Blue (KU577463)
142346
142272
-
Gly
TCC
[ENA]
¡û
>PHG14102826
KJ451625
Myoviridae
Bacillus phage Bcp1 TahiMoana (KJ451625)
31091
31165
+
Gly
TCC
[ENA]
¡û
Identical group No.475178 (1 seq.)
>PHG181001909
KT995480
Herelleviridae
Bacillus virus BM15 (KT995480)
29354
29428
+
Gly
TCC
[ENA]
¡û
Identical group No.486541 (18 seq.)
>PHG0100390
DQ003638
Myoviridae
Listeria virus A511 T4dC-46 (DQ003638)
28381
28311
-
Gly
TCC
[ENA]
¡û
>PHG0100406
DQ004855
Myoviridae
Listeria virus P100 T4dC-46 (DQ004855)
126257
126187
-
Gly
TCC
[ENA]
¡û
>PHG181001513
KT319598
Myoviridae
Listeria phage WIL-2 (KT319598)
3375
3445
+
Gly
TCC
[ENA]
¡û
>PHG181001527
KT319610
Herelleviridae
Listeria phage WIL-3 (KT319610)
3296
3366
+
Gly
TCC
[ENA]
¡û
>PHG14101585
JQ797329
Myoviridae
Listeria phage vB_LmoM_AG20 Lu11 (JQ797329)
28389
28319
-
Gly
TCC
[ENA]
¡û
>PHG14101791
JX126918
Myoviridae
Listeria phage LP-125 Lu11 (JX126918)
37840
37770
-
Gly
TCC
[ENA]
¡û
>PHG14102709
KJ094029
Myoviridae
Listeria phage LP-064 RIP1 (KJ094029)
37841
37771
-
Gly
TCC
[ENA]
¡û
>PHG14102725
KJ094030
Myoviridae
Listeria phage LP-083-2 RIP1 (KJ094030)
34507
34437
-
Gly
TCC
[ENA]
¡û
>PHG14102741
KJ094031
Myoviridae
Listeria phage LP-124 RIP1 (KJ094031)
132392
132322
-
Gly
TCC
[ENA]
¡û
>PHG14102758
KJ094033
Myoviridae
Listeria phage LP-048 RIP1 (KJ094033)
30368
30298
-
Gly
TCC
[ENA]
¡û
>PHG14102911
KJ535721
Myoviridae
Listeria phage List-36 (KJ535721)
100670
100740
+
Gly
TCC
[ENA]
¡û
>PHG14102924
KJ535722
Myoviridae
Listeria phage LMSP-25 (KJ535722)
44246
44176
-
Gly
TCC
[ENA]
¡û
>PHG14102942
KJ586794
Myoviridae
Listeria phage LMTA-34 LMSP-25 (KJ586794)
44246
44176
-
Gly
TCC
[ENA]
¡û
>PHG14102955
KJ586795
Myoviridae
Listeria phage LMTA-94 LMSP-25 (KJ586795)
103365
103435
+
Gly
TCC
[ENA]
¡û
>PHG14102964
KJ591604
Myoviridae
Listeria phage LMTA-148 LMSP-25 (KJ591604)
37036
36966
-
Gly
TCC
[ENA]
¡û
>PHG14102977
KJ591605
Myoviridae
Listeria phage LMTA-57 LMSP-25 (KJ591605)
113474
113544
+
Gly
TCC
[ENA]
¡û
>PHG14103024
KJ668715
Myoviridae
Listeria phage LMTA-34 IB4755 (KJ668715)
90024
90094
+
Gly
TCC
[ENA]
¡û
>PHG14103140
KM373208
Myoviridae
Listeria phage WIL-1 81 (KM373208)
3663
3733
+
Gly
TCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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