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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Herelleviridae
Anticodon = TCT
HIT:
11 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.172571 (3 seq.)
>PHG181003717
KX987999
Herelleviridae
Bacillus phage BCP12 (KX987999)
126576
126500
-
Arg
TCT
[ENA]
¡û
>PHG14101337
JN797797
Myoviridae
Bacillus phage BCP78 Bongo (JN797797)
1523
1447
-
Arg
TCT
[ENA]
¡û
>PHG14101354
JN797798
Myoviridae
Bacillus phage BCU4 Bongo (JN797798)
149591
149515
-
Arg
TCT
[ENA]
¡û
Identical group No.199597 (6 seq.)
>WENV182598001
OJJD01000051
[OJJD] metagenome; faeces
107479
107554
+
Arg
TCT
[ENA]
¢þ
>PHG0100195
AP009390
Myoviridae
Enterococcus phage phiEF24C (AP009390)
138557
138482
-
Arg
TCT
[ENA]
¡û
>PHG181000124
AP018714
Herelleviridae
Enterococcus phage phiEF17H (AP018714)
140231
140156
-
Arg
TCT
[ENA]
¡û
>PHG181000131
AP018715
Herelleviridae
Enterococcus phage phiM1EF22 (AP018715)
139524
139449
-
Arg
TCT
[ENA]
¡û
>PHG14100005
AB609718
Myoviridae
Enterococcus phage phiEF24C-P2 (AB609718)
138557
138482
-
Arg
TCT
[ENA]
¡û
>PHG14103030
KJ801817
Myoviridae
Enterococcus phage ECP3 IB4755 (KJ801817)
100969
101044
+
Arg
TCT
[ENA]
¡û
Identical group No.207760 (4 seq.)
>WENV170965318
MTEU01000595
[MTEU] soil metagenome; naturally attenuated soil
4730
4655
-
Arg
TCT
[ENA]
¢þ
>WENV170966182
MTEX01003701
[MTEX] soil metagenome; soil biostimulated with molasses as carbon source
16789
16714
-
Arg
TCT
[ENA]
¢þ
>PHG181000717
KJ676859
Herelleviridae
Bacillus phage JBP901 (KJ676859)
157387
157312
-
Arg
TCT
[ENA]
¡û
>PHG14102830
KJ451625
Myoviridae
Bacillus phage Bcp1 TahiMoana (KJ451625)
31523
31598
+
Arg
TCT
[ENA]
¡û
Identical group No.210549 (3 seq.)
>WENV170965941
MTEV01010486
[MTEV] soil metagenome; soil bioaugmentation with soil previously exposed to atrazine
1449
1374
-
Arg
TCT
[ENA]
¢þ
>PHG181001443
KT224359
Herelleviridae
Bacillus phage TsarBomba (KT224359)
27618
27693
+
Arg
TCT
[ENA]
¡û
>PHG181003369
KX495186
Herelleviridae
Bacillus phage PK16 (KX495186)
155923
155848
-
Arg
TCT
[ENA]
¡û
Identical group No.219044 (2 seq.)
>PHG181001913
KT995480
Herelleviridae
Bacillus virus BM15 (KT995480)
29769
29844
+
Arg
TCT
[ENA]
¡û
>PHG14101642
JX094431
Myoviridae
Bacillus phage vB_BceM_Bc431v3 Lu11 (JX094431)
157227
157152
-
Arg
TCT
[ENA]
¡û
Identical group No.251842 (2 seq.)
>PHG181000676
KJ081346
Herelleviridae
Bacillus phage BCP8-2 (KJ081346)
35083
35009
-
Arg
TCT
[ENA]
¡û
>PHG181001422
KT187252
Herelleviridae
Bacillus phage PBC6 (KT187252)
1362
1286
-
Arg
TCT
[ENA]
¡û
Identical group No.264680 (1 seq.)
>PHG181002086
KU577463
Herelleviridae
Bacillus phage Deep Blue (KU577463)
141747
141672
-
Arg
TCT
[ENA]
¡û
Identical group No.354538 (1 seq.)
>PHG181003958
KY368640
Herelleviridae
Bacillus phage vB_BsuM-Goe3 (KY368640)
32712
32786
+
Arg
TCT
[ENA]
¡û
Identical group No.357496 (5 seq.)
>WENV180278767
OBHX01007844
[OBHX] metagenome; feces
4380
4454
+
Arg
TCT
[ENA]
¢þ
>WENV180348044
OBLO01002621
[OBLO] metagenome; feces
11677
11603
-
Arg
TCT
[ENA]
¢þ
>WENV170560032
CYGL01000015
[CYGL] human gut metagenome;
54450
54524
+
Arg
TCT
[ENA]
¢þ
>WENV170560226
CYGL01000227
[CYGL] human gut metagenome;
25201
25127
-
Arg
TCT
[ENA]
¢þ
>PHG181000886
KP339049
Herelleviridae
Enterococcus phage EFDG1 (KP339049)
45433
45359
-
Arg
TCT
[ENA]
¡û
Identical group No.395363 (1 seq.)
>PHG181008697
MH606185
Herelleviridae
Bacillus phage BSP38 (MH606185)
32864
32938
+
Arg
TCT
[ENA]
¡û
Identical group No.486540 (18 seq.)
>PHG0100391
DQ003638
Myoviridae
Listeria virus A511 T4dC-46 (DQ003638)
28064
27994
-
Arg
TCT
[ENA]
¡û
>PHG0100407
DQ004855
Myoviridae
Listeria virus P100 T4dC-46 (DQ004855)
125940
125870
-
Arg
TCT
[ENA]
¡û
>PHG181001514
KT319598
Myoviridae
Listeria phage WIL-2 (KT319598)
3703
3773
+
Arg
TCT
[ENA]
¡û
>PHG181001528
KT319610
Herelleviridae
Listeria phage WIL-3 (KT319610)
3624
3694
+
Arg
TCT
[ENA]
¡û
>PHG14101586
JQ797329
Myoviridae
Listeria phage vB_LmoM_AG20 Lu11 (JQ797329)
28061
27991
-
Arg
TCT
[ENA]
¡û
>PHG14101792
JX126918
Myoviridae
Listeria phage LP-125 Lu11 (JX126918)
37512
37442
-
Arg
TCT
[ENA]
¡û
>PHG14102710
KJ094029
Myoviridae
Listeria phage LP-064 RIP1 (KJ094029)
37513
37443
-
Arg
TCT
[ENA]
¡û
>PHG14102726
KJ094030
Myoviridae
Listeria phage LP-083-2 RIP1 (KJ094030)
34179
34109
-
Arg
TCT
[ENA]
¡û
>PHG14102742
KJ094031
Myoviridae
Listeria phage LP-124 RIP1 (KJ094031)
132064
131994
-
Arg
TCT
[ENA]
¡û
>PHG14102759
KJ094033
Myoviridae
Listeria phage LP-048 RIP1 (KJ094033)
30040
29970
-
Arg
TCT
[ENA]
¡û
>PHG14102912
KJ535721
Myoviridae
Listeria phage List-36 (KJ535721)
100987
101057
+
Arg
TCT
[ENA]
¡û
>PHG14102925
KJ535722
Myoviridae
Listeria phage LMSP-25 (KJ535722)
43929
43859
-
Arg
TCT
[ENA]
¡û
>PHG14102943
KJ586794
Myoviridae
Listeria phage LMTA-34 LMSP-25 (KJ586794)
43929
43859
-
Arg
TCT
[ENA]
¡û
>PHG14102956
KJ586795
Myoviridae
Listeria phage LMTA-94 LMSP-25 (KJ586795)
103693
103763
+
Arg
TCT
[ENA]
¡û
>PHG14102965
KJ591604
Myoviridae
Listeria phage LMTA-148 LMSP-25 (KJ591604)
36719
36649
-
Arg
TCT
[ENA]
¡û
>PHG14102978
KJ591605
Myoviridae
Listeria phage LMTA-57 LMSP-25 (KJ591605)
113791
113861
+
Arg
TCT
[ENA]
¡û
>PHG14103025
KJ668715
Myoviridae
Listeria phage LMTA-34 IB4755 (KJ668715)
90352
90422
+
Arg
TCT
[ENA]
¡û
>PHG14103141
KM373208
Myoviridae
Listeria phage WIL-1 81 (KM373208)
3991
4061
+
Arg
TCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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