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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Herelleviridae
Anticodon = TGA
HIT:
11 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.6514 (10 seq.)
>PHG0100388
DQ003638
Myoviridae
Listeria virus A511 T4dC-46 (DQ003638)
29235
29144
-
Ser
TGA
[ENA]
¡û
>PHG0100404
DQ004855
Myoviridae
Listeria virus P100 T4dC-46 (DQ004855)
127111
127020
-
Ser
TGA
[ENA]
¡û
>PHG181001511
KT319598
Myoviridae
Listeria phage WIL-2 (KT319598)
2520
2611
+
Ser
TGA
[ENA]
¡û
>PHG181001525
KT319610
Herelleviridae
Listeria phage WIL-3 (KT319610)
2441
2532
+
Ser
TGA
[ENA]
¡û
>PHG14101789
JX126918
Myoviridae
Listeria phage LP-125 Lu11 (JX126918)
38695
38604
-
Ser
TGA
[ENA]
¡û
>PHG14102707
KJ094029
Myoviridae
Listeria phage LP-064 RIP1 (KJ094029)
38696
38605
-
Ser
TGA
[ENA]
¡û
>PHG14102723
KJ094030
Myoviridae
Listeria phage LP-083-2 RIP1 (KJ094030)
35362
35271
-
Ser
TGA
[ENA]
¡û
>PHG14102739
KJ094031
Myoviridae
Listeria phage LP-124 RIP1 (KJ094031)
133247
133156
-
Ser
TGA
[ENA]
¡û
>PHG14102909
KJ535721
Myoviridae
Listeria phage List-36 (KJ535721)
99815
99906
+
Ser
TGA
[ENA]
¡û
>PHG14103138
KM373208
Myoviridae
Listeria phage WIL-1 81 (KM373208)
2808
2899
+
Ser
TGA
[ENA]
¡û
Identical group No.22420 (1 seq.)
>PHG181000718
KJ676859
Herelleviridae
Bacillus phage JBP901 (KJ676859)
157306
157217
-
Ser
TGA
[ENA]
¡û
Identical group No.22686 (3 seq.)
>WENV170965942
MTEV01010486
[MTEV] soil metagenome; soil bioaugmentation with soil previously exposed to atrazine
1257
1166
-
Ser
TGA
[ENA]
¢þ
>PHG181003718
KX987999
Herelleviridae
Bacillus phage BCP12 (KX987999)
126495
126404
-
Ser
TGA
[ENA]
¡û
>PHG14101338
JN797797
Myoviridae
Bacillus phage BCP78 Bongo (JN797797)
1442
1351
-
Ser
TGA
[ENA]
¡û
Identical group No.23371 (1 seq.)
>PHG181001444
KT224359
Herelleviridae
Bacillus phage TsarBomba (KT224359)
27782
27873
+
Ser
TGA
[ENA]
¡û
Identical group No.61901 (3 seq.)
>WENV180278766
OBHX01007844
[OBHX] metagenome; feces
3890
3978
+
Ser
TGA
[ENA]
¢þ
>WENV180348043
OBLO01002621
[OBLO] metagenome; feces
12167
12079
-
Ser
TGA
[ENA]
¢þ
>PHG181000885
KP339049
Herelleviridae
Enterococcus phage EFDG1 (KP339049)
45923
45835
-
Ser
TGA
[ENA]
¡û
Identical group No.65238 (1 seq.)
>PHG181001423
KT187252
Herelleviridae
Bacillus phage PBC6 (KT187252)
1284
1197
-
Ser
TGA
[ENA]
¡û
Identical group No.67624 (1 seq.)
>PHG181002087
KU577463
Herelleviridae
Bacillus phage Deep Blue (KU577463)
141581
141494
-
Ser
TGA
[ENA]
¡û
Identical group No.90489 (8 seq.)
>PHG181002322
KU737346
Herelleviridae
Bacillus phage Vinny (KU737346)
32779
32866
+
Ser
TGA
[ENA]
¡û
>PHG181005165
MF288922
Herelleviridae
Bacillus phage Janet (MF288922)
33014
33101
+
Ser
TGA
[ENA]
¡û
>PHG181005959
MF498901
Herelleviridae
Bacillus phage Anthony (MF498901)
32779
32866
+
Ser
TGA
[ENA]
¡û
>PHG181008443
MH538296
Herelleviridae
Bacillus phage Maceta (MH538296)
44044
43957
-
Ser
TGA
[ENA]
¡û
>PHG14100992
JF966203
Myoviridae
Bacillus phage Bastille KSSJEB (JF966203)
6767
6854
+
Ser
TGA
[ENA]
¡û
>PHG14102879
KJ489397
Myoviridae
Bacillus phage CAM003 GT7 (KJ489397)
32943
33030
+
Ser
TGA
[ENA]
¡û
>PHG14102886
KJ489398
Myoviridae
Bacillus phage Evoli GT7 (KJ489398)
32674
32761
+
Ser
TGA
[ENA]
¡û
>PHG14102893
KJ489400
Myoviridae
Bacillus phage Hoody T GT7 (KJ489400)
32764
32851
+
Ser
TGA
[ENA]
¡û
Identical group No.93035 (1 seq.)
>PHG181005159
MF288921
Herelleviridae
Bacillus phage OTooleKemple52 (MF288921)
32254
32341
+
Ser
TGA
[ENA]
¡û
Identical group No.104319 (2 seq.)
>PHG181000677
KJ081346
Herelleviridae
Bacillus phage BCP8-2 (KJ081346)
34865
34778
-
Ser
TGA
[ENA]
¡û
>PHG181003370
KX495186
Herelleviridae
Bacillus phage PK16 (KX495186)
155757
155670
-
Ser
TGA
[ENA]
¡û
Identical group No.110403 (1 seq.)
>PHG181001914
KT995480
Herelleviridae
Bacillus virus BM15 (KT995480)
29850
29935
+
Ser
TGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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