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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Herelleviridae
Anticodon = TGG
HIT:
10 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.158649 (18 seq.)
>PHG0100392
DQ003638
Myoviridae
Listeria virus A511 T4dC-46 (DQ003638)
26876
26802
-
Pro
TGG
[ENA]
¡û
>PHG0100408
DQ004855
Myoviridae
Listeria virus P100 T4dC-46 (DQ004855)
124752
124678
-
Pro
TGG
[ENA]
¡û
>PHG181001515
KT319598
Myoviridae
Listeria phage WIL-2 (KT319598)
4891
4965
+
Pro
TGG
[ENA]
¡û
>PHG181001529
KT319614
Herelleviridae
Listeria phage WIL-3 (KT319614)
463
537
+
Pro
TGG
[ENA]
¡û
>PHG14101587
JQ797329
Myoviridae
Listeria phage vB_LmoM_AG20 Lu11 (JQ797329)
26873
26799
-
Pro
TGG
[ENA]
¡û
>PHG14101793
JX126918
Myoviridae
Listeria phage LP-125 Lu11 (JX126918)
36324
36250
-
Pro
TGG
[ENA]
¡û
>PHG14102711
KJ094029
Myoviridae
Listeria phage LP-064 RIP1 (KJ094029)
36325
36251
-
Pro
TGG
[ENA]
¡û
>PHG14102727
KJ094030
Myoviridae
Listeria phage LP-083-2 RIP1 (KJ094030)
32991
32917
-
Pro
TGG
[ENA]
¡û
>PHG14102743
KJ094031
Myoviridae
Listeria phage LP-124 RIP1 (KJ094031)
130876
130802
-
Pro
TGG
[ENA]
¡û
>PHG14102760
KJ094033
Myoviridae
Listeria phage LP-048 RIP1 (KJ094033)
28850
28776
-
Pro
TGG
[ENA]
¡û
>PHG14102913
KJ535721
Myoviridae
Listeria phage List-36 (KJ535721)
102175
102249
+
Pro
TGG
[ENA]
¡û
>PHG14102926
KJ535722
Myoviridae
Listeria phage LMSP-25 (KJ535722)
42741
42667
-
Pro
TGG
[ENA]
¡û
>PHG14102944
KJ586794
Myoviridae
Listeria phage LMTA-34 LMSP-25 (KJ586794)
42741
42667
-
Pro
TGG
[ENA]
¡û
>PHG14102957
KJ586795
Myoviridae
Listeria phage LMTA-94 LMSP-25 (KJ586795)
104882
104956
+
Pro
TGG
[ENA]
¡û
>PHG14102966
KJ591604
Myoviridae
Listeria phage LMTA-148 LMSP-25 (KJ591604)
35529
35455
-
Pro
TGG
[ENA]
¡û
>PHG14102979
KJ591605
Myoviridae
Listeria phage LMTA-57 LMSP-25 (KJ591605)
114979
115053
+
Pro
TGG
[ENA]
¡û
>PHG14103026
KJ668715
Myoviridae
Listeria phage LMTA-34 IB4755 (KJ668715)
91540
91614
+
Pro
TGG
[ENA]
¡û
>PHG14103142
KM373208
Myoviridae
Listeria phage WIL-1 81 (KM373208)
5179
5253
+
Pro
TGG
[ENA]
¡û
Identical group No.161495 (2 seq.)
>WENV170965945
MTEV01010486
[MTEV] soil metagenome; soil bioaugmentation with soil previously exposed to atrazine
818
743
-
Pro
TGG
[ENA]
¢þ
>PHG181001447
KT224359
Herelleviridae
Bacillus phage TsarBomba (KT224359)
28186
28261
+
Pro
TGG
[ENA]
¡û
Identical group No.173160 (2 seq.)
>PHG181003721
KX987999
Herelleviridae
Bacillus phage BCP12 (KX987999)
126058
125982
-
Pro
TGG
[ENA]
¡û
>PHG14101341
JN797797
Myoviridae
Bacillus phage BCP78 Bongo (JN797797)
1005
929
-
Pro
TGG
[ENA]
¡û
Identical group No.218087 (4 seq.)
>WENV182598003
OJJD01000051
[OJJD] metagenome; faeces
108352
108425
+
Pro
TGG
[ENA]
¢þ
>PHG181000126
AP018714
Herelleviridae
Enterococcus phage phiEF17H (AP018714)
139207
139134
-
Pro
TGG
[ENA]
¡û
>PHG181004799
MF001358
Siphoviridae
Enterococcus phage EF1 (MF001358)
44564
44637
+
Pro
TGG
[ENA]
¡û
>PHG181004831
MF001361
Siphoviridae
Enterococcus phage EF5 (MF001361)
72782
72709
-
Pro
TGG
[ENA]
¡û
Identical group No.256244 (2 seq.)
>PHG181001426
KT187252
Herelleviridae
Bacillus phage PBC6 (KT187252)
881
806
-
Pro
TGG
[ENA]
¡û
>PHG14101357
JN797798
Myoviridae
Bacillus phage BCU4 Bongo (JN797798)
148955
148880
-
Pro
TGG
[ENA]
¡û
Identical group No.357498 (5 seq.)
>WENV180278769
OBHX01007844
[OBHX] metagenome; feces
4978
5050
+
Pro
TGG
[ENA]
¢þ
>WENV180348046
OBLO01002621
[OBLO] metagenome; feces
11079
11007
-
Pro
TGG
[ENA]
¢þ
>WENV170560034
CYGL01000015
[CYGL] human gut metagenome;
55046
55118
+
Pro
TGG
[ENA]
¢þ
>WENV170560228
CYGL01000227
[CYGL] human gut metagenome;
24605
24533
-
Pro
TGG
[ENA]
¢þ
>PHG181000888
KP339049
Herelleviridae
Enterococcus phage EFDG1 (KP339049)
44959
44887
-
Pro
TGG
[ENA]
¡û
Identical group No.380538 (1 seq.)
>PHG181002090
KU577463
Herelleviridae
Bacillus phage Deep Blue (KU577463)
141088
141014
-
Pro
TGG
[ENA]
¡û
Identical group No.420833 (5 seq.)
>WENV170965323
MTEU01000595
[MTEU] soil metagenome; naturally attenuated soil
3626
3555
-
Pro
TGG
[ENA]
¢þ
>WENV170966187
MTEX01003701
[MTEX] soil metagenome; soil biostimulated with molasses as carbon source
15685
15614
-
Pro
TGG
[ENA]
¢þ
>PHG181000680
KJ081346
Herelleviridae
Bacillus phage BCP8-2 (KJ081346)
34369
34298
-
Pro
TGG
[ENA]
¡û
>PHG181000721
KJ676859
Herelleviridae
Bacillus phage JBP901 (KJ676859)
156802
156731
-
Pro
TGG
[ENA]
¡û
>PHG181001917
KT995480
Herelleviridae
Bacillus virus BM15 (KT995480)
30339
30410
+
Pro
TGG
[ENA]
¡û
Identical group No.429663 (2 seq.)
>PHG181003373
KX495186
Herelleviridae
Bacillus phage PK16 (KX495186)
155274
155202
-
Pro
TGG
[ENA]
¡û
>PHG14101646
JX094431
Myoviridae
Bacillus phage vB_BceM_Bc431v3 Lu11 (JX094431)
156692
156620
-
Pro
TGG
[ENA]
¡û
Identical group No.438587 (1 seq.)
>PHG181003703
KX961630
Herelleviridae
Bacillus phage QCM8 (KX961630)
28131
28203
+
Pro
TGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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