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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Herelleviridae
Anticodon = TGT
HIT:
6 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.207759 (8 seq.)
>WENV170965314
MTEU01000595
[MTEU] soil metagenome; naturally attenuated soil
5283
5207
-
Thr
TGT
[ENA]
¢þ
>WENV170966178
MTEX01003701
[MTEX] soil metagenome; soil biostimulated with molasses as carbon source
17342
17266
-
Thr
TGT
[ENA]
¢þ
>PHG181000674
KJ081346
Herelleviridae
Bacillus phage BCP8-2 (KJ081346)
35823
35747
-
Thr
TGT
[ENA]
¡û
>PHG181000714
KJ676859
Herelleviridae
Bacillus phage JBP901 (KJ676859)
157819
157743
-
Thr
TGT
[ENA]
¡û
>PHG181001910
KT995480
Herelleviridae
Bacillus virus BM15 (KT995480)
29435
29511
+
Thr
TGT
[ENA]
¡û
>PHG181002084
KU577463
Herelleviridae
Bacillus phage Deep Blue (KU577463)
142104
142030
-
Thr
TGT
[ENA]
¡û
>PHG181003367
KX495186
Herelleviridae
Bacillus phage PK16 (KX495186)
156949
156873
-
Thr
TGT
[ENA]
¡û
>PHG14101637
JX094431
Myoviridae
Bacillus phage vB_BceM_Bc431v3 Lu11 (JX094431)
157741
157665
-
Thr
TGT
[ENA]
¡û
Identical group No.244838 (4 seq.)
>WENV180279391
OBHX01033328
[OBHX] metagenome; feces
145
72
-
Thr
TGT
[ENA]
¢þ
>WENV180349128
OBLO01023687
[OBLO] metagenome; feces
2044
1971
-
Thr
TGT
[ENA]
¢þ
>WENV170560024
CYGL01000015
[CYGL] human gut metagenome;
51096
51169
+
Thr
TGT
[ENA]
¢þ
>PHG181003997
KY549443
Herelleviridae
Enterococcus phage EFP01 (KY549443)
107690
107763
+
Thr
TGT
[ENA]
¡û
Identical group No.318704 (3 seq.)
>WENV170965937
MTEV01010486
[MTEV] soil metagenome; soil bioaugmentation with soil previously exposed to atrazine
1968
1893
-
Thr
TGT
[ENA]
¢þ
>PHG181001419
KT187252
Herelleviridae
Bacillus phage PBC6 (KT187252)
2138
2063
-
Thr
TGT
[ENA]
¡û
>PHG181001439
KT224359
Herelleviridae
Bacillus phage TsarBomba (KT224359)
27085
27160
+
Thr
TGT
[ENA]
¡û
Identical group No.421846 (13 seq.)
>PHG0100383
DQ003638
Myoviridae
Listeria virus A511 T4dC-46 (DQ003638)
29758
29687
-
Thr
TGT
[ENA]
¡û
>PHG0100399
DQ004855
Myoviridae
Listeria virus P100 T4dC-46 (DQ004855)
127634
127563
-
Thr
TGT
[ENA]
¡û
>PHG181001506
KT319598
Myoviridae
Listeria phage WIL-2 (KT319598)
1997
2068
+
Thr
TGT
[ENA]
¡û
>PHG181001520
KT319610
Herelleviridae
Listeria phage WIL-3 (KT319610)
1918
1989
+
Thr
TGT
[ENA]
¡û
>PHG14101578
JQ797329
Myoviridae
Listeria phage vB_LmoM_AG20 Lu11 (JQ797329)
29155
29084
-
Thr
TGT
[ENA]
¡û
>PHG14101784
JX126918
Myoviridae
Listeria phage LP-125 Lu11 (JX126918)
39218
39147
-
Thr
TGT
[ENA]
¡û
>PHG14102702
KJ094029
Myoviridae
Listeria phage LP-064 RIP1 (KJ094029)
39219
39148
-
Thr
TGT
[ENA]
¡û
>PHG14102718
KJ094030
Myoviridae
Listeria phage LP-083-2 RIP1 (KJ094030)
35885
35814
-
Thr
TGT
[ENA]
¡û
>PHG14102734
KJ094031
Myoviridae
Listeria phage LP-124 RIP1 (KJ094031)
133770
133699
-
Thr
TGT
[ENA]
¡û
>PHG14102751
KJ094033
Myoviridae
Listeria phage LP-048 RIP1 (KJ094033)
31746
31675
-
Thr
TGT
[ENA]
¡û
>PHG14102904
KJ535721
Myoviridae
Listeria phage List-36 (KJ535721)
99292
99363
+
Thr
TGT
[ENA]
¡û
>PHG14103017
KJ668715
Myoviridae
Listeria phage LMTA-34 IB4755 (KJ668715)
89030
89101
+
Thr
TGT
[ENA]
¡û
>PHG14103133
KM373208
Myoviridae
Listeria phage WIL-1 81 (KM373208)
2285
2356
+
Thr
TGT
[ENA]
¡û
Identical group No.428770 (2 seq.)
>WENV182598005
OJJD01000051
[OJJD] metagenome; faeces
110045
110116
+
Thr
TGT
[ENA]
¢þ
>PHG181000128
AP018714
Herelleviridae
Enterococcus phage phiEF17H (AP018714)
137514
137443
-
Thr
TGT
[ENA]
¡û
Identical group No.468839 (1 seq.)
>PHG181000875
KP339049
Herelleviridae
Enterococcus phage EFDG1 (KP339049)
50289
50218
-
Thr
TGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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