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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Herelleviridae
Anticodon = TTC
HIT:
10 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.179486 (17 seq.)
>W1710937906
LOMO01000001
Bacillota
Bacillus cereus [LOMO]
103973
103898
-
Glu
TTC
[ENA]
¡û
>W131186879
ARXZ01004211
Bacillota
Bacillus thuringiensis T01-328 [ARXZ]
315
390
+
Glu
TTC
[ENA]
¡û
>PL171000597
CP003890
Firmicutes
Bacillus thuringiensis Bt407 plasmid:BTB_502p
102154
102079
-
Glu
TTC
[ENA]
¡û
>PHG181000713
KJ676859
Herelleviridae
Bacillus phage JBP901 (KJ676859)
158454
158378
-
Glu
TTC
[ENA]
¡û
>W09131060
ACMZ01000145
Bacillota
Bacillus thuringiensis Bt407 [ACMZ]
406184
406259
+
Glu
TTC
[ENA]
¡û
>W1910471222
FWZH01000059
Bacillota
Bacillus cereus 16-00183 [FWZH]
414454
414379
-
Glu
TTC
[ENA]
¡û
>W1911295776
NTSO01000015
Bacillota
Bacillus cereus AFS020204 [NTSO]
185863
185938
+
Glu
TTC
[ENA]
¡û
>W1911298319
NTTY01000012
Bacillota
Bacillus anthracis AFS017361 [NTTY]
300348
300273
-
Glu
TTC
[ENA]
¡û
>W1911298971
NTUH01000006
Bacillota
Bacillus thuringiensis AFS016894 [NTUH]
93622
93547
-
Glu
TTC
[ENA]
¡û
>W1911299729
NTUS01000013
Bacillota
Bacillus thuringiensis AFS015413 [NTUS]
94081
94006
-
Glu
TTC
[ENA]
¡û
>W1911307527
NTYZ01000002
Bacillota
Bacillus cereus AFS002848 [NTYZ]
369260
369185
-
Glu
TTC
[ENA]
¡û
>W1911334053
NUNQ01000029
Bacillota
Bacillus cereus AFS035044 [NUNQ]
48944
49019
+
Glu
TTC
[ENA]
¡û
>W1911357552
NVAN01000010
Bacillota
Bacillus cereus AFS070891 [NVAN]
4308
4383
+
Glu
TTC
[ENA]
¡û
>W1911370180
NVHM01000015
Bacillota
Bacillus toyonensis AFS072832 [NVHM]
71933
72008
+
Glu
TTC
[ENA]
¡û
>W1911565466
PCOB01000003
Bacillota
Bacillus sp. MYb78 [PCOB]
406168
406243
+
Glu
TTC
[ENA]
¡û
>W1810120139
PHSK01000037
Bacillota
Bacillus thuringiensis serovar berliner Bt407 [PHSK]
364296
364221
-
Glu
TTC
[ENA]
¡û
>W1610794030
LOMO01000001
Bacillota
Bacillus cereus [LOMO]
103973
103898
-
Glu
TTC
[ENA]
¡û
Identical group No.210547 (5 seq.)
>WENV170965939
MTEV01010486
[MTEV] soil metagenome; soil bioaugmentation with soil previously exposed to atrazine
1697
1624
-
Glu
TTC
[ENA]
¢þ
>PHG181001441
KT224359
Herelleviridae
Bacillus phage TsarBomba (KT224359)
27367
27440
+
Glu
TTC
[ENA]
¡û
>PHG181003715
KX987999
Herelleviridae
Bacillus phage BCP12 (KX987999)
126807
126734
-
Glu
TTC
[ENA]
¡û
>PHG14101335
JN797797
Myoviridae
Bacillus phage BCP78 Bongo (JN797797)
1754
1681
-
Glu
TTC
[ENA]
¡û
>PHG14101352
JN797798
Myoviridae
Bacillus phage BCU4 Bongo (JN797798)
149822
149749
-
Glu
TTC
[ENA]
¡û
Identical group No.219021 (9 seq.)
>PHG181002327
KU737348
Herelleviridae
Bacillus phage Zuko (KU737348)
33857
33933
+
Glu
TTC
[ENA]
¡û
>PHG181002330
KU737349
Herelleviridae
Bacillus phage DIGNKC (KU737349)
33273
33349
+
Glu
TTC
[ENA]
¡û
>PHG181002587
KX147229
Herelleviridae
Bacillus phage Belinda (KX147229)
33307
33383
+
Glu
TTC
[ENA]
¡û
>PHG181003694
KX961629
Herelleviridae
Bacillus phage BJ4 (KX961629)
32334
32410
+
Glu
TTC
[ENA]
¡û
>PHG181003709
KX961632
Herelleviridae
Bacillus phage SBP8a (KX961632)
32768
32844
+
Glu
TTC
[ENA]
¡û
>PHG181005155
MF288919
Herelleviridae
Bacillus phage AaronPhadgers (MF288919)
33430
33506
+
Glu
TTC
[ENA]
¡û
>PHG181007247
MG763894
Herelleviridae
Bacillus phage HonestAbe (MG763894)
33071
33147
+
Glu
TTC
[ENA]
¡û
>PHG181008438
MH538193
Herelleviridae
Bacillus phage Saddex (MH538193)
33602
33678
+
Glu
TTC
[ENA]
¡û
>PHG14100510
HM144387
Myoviridae
Bacillus phage W.Ph. AO7543 (HM144387)
8195
8271
+
Glu
TTC
[ENA]
¡û
Identical group No.219036 (2 seq.)
>PHG181001912
KT995480
Herelleviridae
Bacillus virus BM15 (KT995480)
29599
29675
+
Glu
TTC
[ENA]
¡û
>PHG14101639
JX094431
Myoviridae
Bacillus phage vB_BceM_Bc431v3 Lu11 (JX094431)
157575
157499
-
Glu
TTC
[ENA]
¡û
Identical group No.231011 (1 seq.)
>PHG181003700
KX961630
Herelleviridae
Bacillus phage QCM8 (KX961630)
27623
27698
+
Glu
TTC
[ENA]
¡û
Identical group No.251841 (1 seq.)
>PHG181000675
KJ081346
Herelleviridae
Bacillus phage BCP8-2 (KJ081346)
35161
35086
-
Glu
TTC
[ENA]
¡û
Identical group No.256243 (1 seq.)
>PHG181001421
KT187252
Herelleviridae
Bacillus phage PBC6 (KT187252)
1477
1403
-
Glu
TTC
[ENA]
¡û
Identical group No.261234 (2 seq.)
>PHG181003368
KX495186
Herelleviridae
Bacillus phage PK16 (KX495186)
156194
156119
-
Glu
TTC
[ENA]
¡û
>PHG14102828
KJ451625
Myoviridae
Bacillus phage Bcp1 TahiMoana (KJ451625)
31252
31327
+
Glu
TTC
[ENA]
¡û
Identical group No.264679 (1 seq.)
>PHG181002085
KU577463
Herelleviridae
Bacillus phage Deep Blue (KU577463)
141916
141841
-
Glu
TTC
[ENA]
¡û
Identical group No.449534 (4 seq.)
>WENV180279077
OBHX01015602
[OBHX] metagenome; feces
2938
3011
+
Glu
TTC
[ENA]
¢þ
>WENV180349251
OBLO01030211
[OBLO] metagenome; feces
439
512
+
Glu
TTC
[ENA]
¢þ
>WENV170560019
CYGL01000015
[CYGL] human gut metagenome;
49553
49626
+
Glu
TTC
[ENA]
¢þ
>PHG181000870
KP339049
Herelleviridae
Enterococcus phage EFDG1 (KP339049)
52589
52516
-
Glu
TTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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