This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
Herelleviridae
Anticodon = TTG
HIT:
11 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.318898 (2 seq.)
>PHG181000719
KJ676859
Herelleviridae
Bacillus phage JBP901 (KJ676859)
157135
157060
-
Gln
TTG
[ENA]
¡û
>PHG181003371
KX495186
Herelleviridae
Bacillus phage PK16 (KX495186)
155594
155519
-
Gln
TTG
[ENA]
¡û
Identical group No.397511 (1 seq.)
>PHG181000678
KJ081346
Herelleviridae
Bacillus phage BCP8-2 (KJ081346)
34703
34627
-
Gln
TTG
[ENA]
¡û
Identical group No.401632 (4 seq.)
>WENV170965320
MTEU01000595
[MTEU] soil metagenome; naturally attenuated soil
4031
3956
-
Gln
TTG
[ENA]
¢þ
>WENV170966184
MTEX01003701
[MTEX] soil metagenome; soil biostimulated with molasses as carbon source
16090
16015
-
Gln
TTG
[ENA]
¢þ
>PHG181001915
KT995480
Herelleviridae
Bacillus virus BM15 (KT995480)
30015
30090
+
Gln
TTG
[ENA]
¡û
>PHG14102832
KJ451625
Myoviridae
Bacillus phage Bcp1 TahiMoana (KJ451625)
31854
31929
+
Gln
TTG
[ENA]
¡û
Identical group No.421672 (1 seq.)
>PHG181002088
KU577463
Herelleviridae
Bacillus phage Deep Blue (KU577463)
141415
141339
-
Gln
TTG
[ENA]
¡û
Identical group No.672104 (5 seq.)
>PHG181002320
KU737346
Herelleviridae
Bacillus phage Vinny (KU737346)
32463
32535
+
Gln
TTG
[ENA]
¡û
>PHG181008441
MH538296
Herelleviridae
Bacillus phage Maceta (MH538296)
44360
44289
-
Gln
TTG
[ENA]
¡û
>PHG14102877
KJ489397
Myoviridae
Bacillus phage CAM003 GT7 (KJ489397)
32627
32699
+
Gln
TTG
[ENA]
¡û
>PHG14102884
KJ489398
Myoviridae
Bacillus phage Evoli GT7 (KJ489398)
32358
32430
+
Gln
TTG
[ENA]
¡û
>PHG14102891
KJ489400
Myoviridae
Bacillus phage Hoody T GT7 (KJ489400)
32448
32520
+
Gln
TTG
[ENA]
¡û
Identical group No.695878 (12 seq.)
>PHG0100384
DQ003638
Myoviridae
Listeria virus A511 T4dC-46 (DQ003638)
29668
29596
-
Gln
TTG
[ENA]
¡û
>PHG0100400
DQ004855
Myoviridae
Listeria virus P100 T4dC-46 (DQ004855)
127544
127472
-
Gln
TTG
[ENA]
¡û
>PHG181001507
KT319598
Myoviridae
Listeria phage WIL-2 (KT319598)
2087
2159
+
Gln
TTG
[ENA]
¡û
>PHG181001521
KT319610
Herelleviridae
Listeria phage WIL-3 (KT319610)
2008
2080
+
Gln
TTG
[ENA]
¡û
>PHG14101785
JX126918
Myoviridae
Listeria phage LP-125 Lu11 (JX126918)
39128
39056
-
Gln
TTG
[ENA]
¡û
>PHG14102703
KJ094029
Myoviridae
Listeria phage LP-064 RIP1 (KJ094029)
39129
39057
-
Gln
TTG
[ENA]
¡û
>PHG14102719
KJ094030
Myoviridae
Listeria phage LP-083-2 RIP1 (KJ094030)
35795
35723
-
Gln
TTG
[ENA]
¡û
>PHG14102735
KJ094031
Myoviridae
Listeria phage LP-124 RIP1 (KJ094031)
133680
133608
-
Gln
TTG
[ENA]
¡û
>PHG14102752
KJ094033
Myoviridae
Listeria phage LP-048 RIP1 (KJ094033)
31656
31584
-
Gln
TTG
[ENA]
¡û
>PHG14102905
KJ535721
Myoviridae
Listeria phage List-36 (KJ535721)
99382
99454
+
Gln
TTG
[ENA]
¡û
>PHG14103018
KJ668715
Myoviridae
Listeria phage LMTA-34 IB4755 (KJ668715)
89120
89192
+
Gln
TTG
[ENA]
¡û
>PHG14103134
KM373208
Myoviridae
Listeria phage WIL-1 81 (KM373208)
2375
2447
+
Gln
TTG
[ENA]
¡û
Identical group No.760722 (1 seq.)
>PHG181000867
KP339049
Herelleviridae
Enterococcus phage EFDG1 (KP339049)
53841
53768
-
Gln
TTG
[ENA]
¡û
Identical group No.794749 (6 seq.)
>WENV170965943
MTEV01010486
[MTEV] soil metagenome; soil bioaugmentation with soil previously exposed to atrazine
1088
1016
-
Gln
TTG
[ENA]
¢þ
>PHG181001424
KT187252
Herelleviridae
Bacillus phage PBC6 (KT187252)
1115
1043
-
Gln
TTG
[ENA]
¡û
>PHG181001445
KT224359
Herelleviridae
Bacillus phage TsarBomba (KT224359)
27951
28023
+
Gln
TTG
[ENA]
¡û
>PHG181003719
KX987999
Herelleviridae
Bacillus phage BCP12 (KX987999)
126326
126254
-
Gln
TTG
[ENA]
¡û
>PHG14101339
JN797797
Myoviridae
Bacillus phage BCP78 Bongo (JN797797)
1273
1201
-
Gln
TTG
[ENA]
¡û
>PHG14101356
JN797798
Myoviridae
Bacillus phage BCU4 Bongo (JN797798)
149341
149269
-
Gln
TTG
[ENA]
¡û
Identical group No.805597 (1 seq.)
>PHG181003701
KX961630
Herelleviridae
Bacillus phage QCM8 (KX961630)
27822
27894
+
Gln
TTG
[ENA]
¡û
Identical group No.805600 (2 seq.)
>PHG181004754
LT960608
Herelleviridae
Bacillus phage SBSphiJ (LT960608)
43640
43712
+
Gln
TTG
[ENA]
¡û
>PHG14102622
KF669652
Myoviridae
Bacillus phage Grass PM6 (KF669652)
32860
32932
+
Gln
TTG
[ENA]
¡û
Identical group No.835223 (1 seq.)
>PHG181008696
MH606185
Herelleviridae
Bacillus phage BSP38 (MH606185)
32230
32303
+
Gln
TTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK