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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Herelleviridae
Anticodon = TTT
HIT:
3 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.244840 (3 seq.)
>WENV180278759
OBHX01007844
[OBHX] metagenome; feces
244
320
+
Lys
TTT
[ENA]
¢þ
>WENV180349130
OBLO01023687
[OBLO] metagenome; feces
1571
1495
-
Lys
TTT
[ENA]
¢þ
>PHG181003999
KY549443
Herelleviridae
Enterococcus phage EFP01 (KY549443)
108163
108239
+
Lys
TTT
[ENA]
¡û
Identical group No.268171 (2 seq.)
>WENV170560026
CYGL01000015
[CYGL] human gut metagenome;
51568
51644
+
Lys
TTT
[ENA]
¢þ
>PHG181000877
KP339049
Herelleviridae
Enterococcus phage EFDG1 (KP339049)
49818
49742
-
Lys
TTT
[ENA]
¡û
Identical group No.412567 (17 seq.)
>PHG0100386
DQ003638
Myoviridae
Listeria virus A511 T4dC-46 (DQ003638)
29396
29325
-
Lys
TTT
[ENA]
¡û
>PHG0100402
DQ004855
Myoviridae
Listeria virus P100 T4dC-46 (DQ004855)
127272
127201
-
Lys
TTT
[ENA]
¡û
>PHG181001509
KT319598
Myoviridae
Listeria phage WIL-2 (KT319598)
2359
2430
+
Lys
TTT
[ENA]
¡û
>PHG181001523
KT319610
Herelleviridae
Listeria phage WIL-3 (KT319610)
2280
2351
+
Lys
TTT
[ENA]
¡û
>PHG14101581
JQ797329
Myoviridae
Listeria phage vB_LmoM_AG20 Lu11 (JQ797329)
28793
28722
-
Lys
TTT
[ENA]
¡û
>PHG14101787
JX126918
Myoviridae
Listeria phage LP-125 Lu11 (JX126918)
38856
38785
-
Lys
TTT
[ENA]
¡û
>PHG14102705
KJ094029
Myoviridae
Listeria phage LP-064 RIP1 (KJ094029)
38857
38786
-
Lys
TTT
[ENA]
¡û
>PHG14102721
KJ094030
Myoviridae
Listeria phage LP-083-2 RIP1 (KJ094030)
35523
35452
-
Lys
TTT
[ENA]
¡û
>PHG14102737
KJ094031
Myoviridae
Listeria phage LP-124 RIP1 (KJ094031)
133408
133337
-
Lys
TTT
[ENA]
¡û
>PHG14102754
KJ094033
Myoviridae
Listeria phage LP-048 RIP1 (KJ094033)
31384
31313
-
Lys
TTT
[ENA]
¡û
>PHG14102907
KJ535721
Myoviridae
Listeria phage List-36 (KJ535721)
99654
99725
+
Lys
TTT
[ENA]
¡û
>PHG14102920
KJ535722
Myoviridae
Listeria phage LMSP-25 (KJ535722)
44878
44807
-
Lys
TTT
[ENA]
¡û
>PHG14102938
KJ586794
Myoviridae
Listeria phage LMTA-34 LMSP-25 (KJ586794)
44878
44807
-
Lys
TTT
[ENA]
¡û
>PHG14102951
KJ586795
Myoviridae
Listeria phage LMTA-94 LMSP-25 (KJ586795)
102450
102521
+
Lys
TTT
[ENA]
¡û
>PHG14102973
KJ591605
Myoviridae
Listeria phage LMTA-57 LMSP-25 (KJ591605)
112842
112913
+
Lys
TTT
[ENA]
¡û
>PHG14103020
KJ668715
Myoviridae
Listeria phage LMTA-34 IB4755 (KJ668715)
89392
89463
+
Lys
TTT
[ENA]
¡û
>PHG14103136
KM373208
Myoviridae
Listeria phage WIL-1 81 (KM373208)
2647
2718
+
Lys
TTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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