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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Herpesvirales
Anticodon = CCT
HIT:
2 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.262122 (4 seq.)
>VRL181000448
KJ668231
Herpesvirales
Falconid herpesvirus 1 S-18 (KJ668231)
4508
4586
+
Arg
CCT
[ENA]
¡û
>VRL181000451
KJ668231
Herpesvirales
Falconid herpesvirus 1 S-18 (KJ668231)
145866
145788
-
Arg
CCT
[ENA]
¡û
>VRL181000540
KX589235
Herpesvirales
Columbid alphaherpesvirus 1 HLJ (KX589235)
4508
4586
+
Arg
CCT
[ENA]
¡û
>VRL181000543
KX589235
Herpesvirales
Columbid alphaherpesvirus 1 HLJ (KX589235)
146039
145961
-
Arg
CCT
[ENA]
¡û
Identical group No.283523 (31 seq.)
>C171083554
CP018780
Alphaproteobacteria
Brucella pituitosa AA2 [CP018779, CP018780, CP018782]
2211183
2211259
+
Arg
CCT
-
¡û
>W141025286
AKVI01000002
Alphaproteobacteria
Ochrobactrum sp. CDB2 [AKVI]
89549
89625
+
Arg
CCT
[ENA]
¡û
>VRL0100055
U27612
Herpesvirales
Stealth virus 1
6853
6777
-
Arg
CCT
[ENA]
¡û
>C181069698
CP022604
Alphaproteobacteria
[Ochrobactrum] quorumnocens A44 [CP022603, CP022604]
2397503
2397579
+
Arg
CCT
-
¡û
>W141819270
JQME01000004
Alphaproteobacteria
Rhizobium sp. CF258 [JQME]
22731
22807
+
Arg
CCT
[ENA]
¡û
>W141821307
JQNM01000004
Alphaproteobacteria
Rhizobium sp. YR295 [JQNM]
22535
22611
+
Arg
CCT
[ENA]
¡û
>W1911084353
NNRJ01000014
Alphaproteobacteria
Brucella thiophenivorans DSM 7216 [NNRJ]
141374
141450
+
Arg
CCT
[ENA]
¡û
>W1911084423
NNRK01000034
Alphaproteobacteria
Brucella rhizosphaerae PR17 [NNRK]
153335
153411
+
Arg
CCT
[ENA]
¡û
>W1911084463
NNRL01000161
Alphaproteobacteria
Brucella grignonensis OgA9a [NNRL]
112927
113003
+
Arg
CCT
[ENA]
¡û
>W1911084496
NNRM01000016
Alphaproteobacteria
Brucella pseudogrignonensis CCUG 30717 [NNRM]
147896
147972
+
Arg
CCT
[ENA]
¡û
>W1911565582
PCOD01000002
Alphaproteobacteria
Brucella pseudogrignonensis MYb70 [PCOD]
179674
179750
+
Arg
CCT
[ENA]
¡û
>W1911565711
PCOG01000001
Alphaproteobacteria
Brucella pseudogrignonensis MYb58 [PCOG]
2251808
2251884
+
Arg
CCT
[ENA]
¡û
>W1911565901
PCOK01000002
Alphaproteobacteria
Brucella pseudogrignonensis MYb37 [PCOK]
625782
625706
-
Arg
CCT
[ENA]
¡û
>W1911565920
PCOL01000001
Alphaproteobacteria
Ochrobactrum sp. MYb29 [PCOL]
111820
111896
+
Arg
CCT
[ENA]
¡û
>W1810119040
PHRE01000004
Alphaproteobacteria
Brucella pituitosa BU72 [PHRE]
310139
310063
-
Arg
CCT
[ENA]
¡û
>W1810423369
PYSY02000001
Alphaproteobacteria
Brucella pituitosa CCUG 50899 [PYSY]
8197
8273
+
Arg
CCT
[ENA]
¡û
>W1810423390
PYSY02000001
Alphaproteobacteria
Brucella pituitosa CCUG 50899 [PYSY]
2425763
2425839
+
Arg
CCT
[ENA]
¡û
>W1810720460
QNRH01000002
Alphaproteobacteria
Pseudochrobactrum asaccharolyticum DSM 25619 [QNRH]
729233
729157
-
Arg
CCT
[ENA]
¡û
>W1510591332
CTZA01000263
Bacillota
Staphylococcus aureus DEU37 [CTZA]
2930
2854
-
Arg
CCT
[ENA]
¡û
>W1510591352
CTZB01000001
Bacillota
Staphylococcus aureus DEU28 [CTZB]
161368
161292
-
Arg
CCT
[ENA]
¡û
>W1510591549
CTZD01000361
Bacillota
Staphylococcus aureus DEU35 [CTZD]
4201
4125
-
Arg
CCT
[ENA]
¡û
>W1510591604
CTZE01000367
Bacillota
Staphylococcus aureus DEU41 [CTZE]
3245
3169
-
Arg
CCT
[ENA]
¡û
>W1510591705
CTZH01000278
Bacillota
Staphylococcus aureus DEU42 [CTZH]
5858
5934
+
Arg
CCT
[ENA]
¡û
>W1510592945
CUAH01000146
Bacillota
Staphylococcus aureus DEU50 [CUAH]
7150
7074
-
Arg
CCT
[ENA]
¡û
>W1510593270
CUAL01002213
Bacillota
Staphylococcus aureus DEU30 [CUAL]
625
549
-
Arg
CCT
[ENA]
¡û
>W1510593445
CUAN01003217
Bacillota
Staphylococcus aureus DEU43 [CUAN]
213
137
-
Arg
CCT
[ENA]
¡û
>W1510595766
CUCA01004768
Bacillota
Staphylococcus aureus DEU36 [CUCA]
94
170
+
Arg
CCT
[ENA]
¡û
>W1510595845
CUCB01020463
Bacillota
Staphylococcus aureus DEU29 [CUCB]
30
104
+
Arg
CCT
[ENA]
¡û
>W1510597242
CUDA01002307
Bacillota
Staphylococcus aureus DEU38 [CUDA]
166
90
-
Arg
CCT
[ENA]
¡û
>W1510597817
CUDK01005358
Bacillota
Staphylococcus aureus DEU39 [CUDK]
68
144
+
Arg
CCT
[ENA]
¡û
>C161090723
CP015775
Alphaproteobacteria
Brucella pseudogrignonensis K8 [CP015775, CP015776]
3710334
3710410
+
Arg
CCT
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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