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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Hot springs metagenome ctg_1106426165452
Anticodon = CCA
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.366099 (4 seq.)
>WENV181228590
OFEH01000333
[OFEH] hypersaline lake metagenome; Grendel Spring, Yellowstone National Park, Wyoming, USA
6015
5939
-
Trp
CCA
[ENA]
¢þ
>WENV181406565
OGCG01000509
[OGCG] hot springs metagenome; Joseph's Coat, Yellowstone National Park, Washington, USA
14903
14827
-
Trp
CCA
[ENA]
¢þ
>ENV09004082
ADKH01000045
Hot springs metagenome ctg_1106445186506
702
778
+
Trp
CCA
[ENA]
¡û
>ENV09004240
ADKL01000352
Hot springs metagenome ctg_1106426165452
1078
1002
-
Trp
CCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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