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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Hot springs metagenome ctg_1106426165452
Anticodon = CCC
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.235407 (5 seq.)
>WENV181229035
OFEJ01000105
[OFEJ] sediment metagenome; Joseph's Coat, Yellowstone National Park, Wyoming, USA
4541
4464
-
Gly
CCC
[ENA]
¢þ
>WENV181406650
OGCG01000777
[OGCG] hot springs metagenome; Joseph's Coat, Yellowstone National Park, Washington, USA
3268
3345
+
Gly
CCC
[ENA]
¢þ
>W1911654458
QEFJ01000003
Thermoproteota
Sulfolobales archaeon SCGC AB-777_K20 [QEFJ]
655
732
+
Gly
CCC
[ENA]
¡û
>ENV09004259
ADKL01000514
Hot springs metagenome ctg_1106426165452
32780
32857
+
Gly
CCC
[ENA]
¡û
>W1610017993
APJY01000001
Thermoproteota
Sulfolobales archaeon Acd1 [APJY]
806584
806507
-
Gly
CCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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