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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Hot springs metagenome ctg_1106426165452
Anticodon = CCG
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.242892 (8 seq.)
>WENV181229023
OFEJ01000074
[OFEJ] sediment metagenome; Joseph's Coat, Yellowstone National Park, Wyoming, USA
5244
5169
-
Arg
CCG
[ENA]
¢þ
>WENV181406369
OGCG01000163
[OGCG] hot springs metagenome; Joseph's Coat, Yellowstone National Park, Washington, USA
45195
45270
+
Arg
CCG
[ENA]
¢þ
>WENV170668504
LAFT01000428
[LAFT] hot springs metagenome; hot springs water enriched for viruses sample NL10_1401_vDNA_Ovation_1.3g/mL
381
457
+
Arg
CCG
[ENA]
¢þ
>W1911654454
QEFJ01000002
Thermoproteota
Sulfolobales archaeon SCGC AB-777_K20 [QEFJ]
28987
29062
+
Arg
CCG
[ENA]
¡û
>W1911654468
QEFM01000001
Thermoproteota
Sulfolobales archaeon SCGC AB-777_J03 [QEFM]
107356
107432
+
Arg
CCG
[ENA]
¡û
>W1911654471
QEFM01000003
Thermoproteota
Sulfolobales archaeon SCGC AB-777_J03 [QEFM]
69289
69364
+
Arg
CCG
[ENA]
¡û
>ENV09004250
ADKL01000502
Hot springs metagenome ctg_1106426165452
15973
15897
-
Arg
CCG
[ENA]
¡û
>W1610018001
APJY01000002
Thermoproteota
Sulfolobales archaeon Acd1 [APJY]
133383
133308
-
Arg
CCG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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