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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Hot springs metagenome ctg_1106426165452
Anticodon = CGG
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.235411 (4 seq.)
>WENV181229109
OFEJ01000404
[OFEJ] sediment metagenome; Joseph's Coat, Yellowstone National Park, Wyoming, USA
1171
1247
+
Pro
CGG
[ENA]
¢þ
>WENV181406510
OGCG01000360
[OGCG] hot springs metagenome; Joseph's Coat, Yellowstone National Park, Washington, USA
19802
19878
+
Pro
CGG
[ENA]
¢þ
>ENV09004260
ADKL01000514
Hot springs metagenome ctg_1106426165452
10512
10434
-
Pro
CGG
[ENA]
¡û
>W1610017989
APJY01000001
Thermoproteota
Sulfolobales archaeon Acd1 [APJY]
828843
828919
+
Pro
CGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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