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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Hot springs metagenome ctg_1106426165452
Anticodon = CTG
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.470504 (6 seq.)
>WENV181229266
OFEJ01002673
[OFEJ] sediment metagenome; Joseph's Coat, Yellowstone National Park, Wyoming, USA
3607
3534
-
Gln
CTG
[ENA]
¢þ
>W1911654459
QEFJ01000007
Thermoproteota
Sulfolobales archaeon SCGC AB-777_K20 [QEFJ]
17491
17418
-
Gln
CTG
[ENA]
¡û
>W1911654476
QEFM01000005
Thermoproteota
Sulfolobales archaeon SCGC AB-777_J03 [QEFM]
22339
22266
-
Gln
CTG
[ENA]
¡û
>ENV09004096
ADKH01001043
Hot springs metagenome ctg_1106445186506
1243
1170
-
Gln
CTG
[ENA]
¡û
>ENV09004253
ADKL01000510
Hot springs metagenome ctg_1106426165452
8460
8387
-
Gln
CTG
[ENA]
¡û
>W1610017994
APJY01000001
Thermoproteota
Sulfolobales archaeon Acd1 [APJY]
680369
680296
-
Gln
CTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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