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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Hot springs metagenome ctg_1106426165452
Anticodon = GAC
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.242912 (6 seq.)
>WENV181229148
OFEJ01000780
[OFEJ] sediment metagenome; Joseph's Coat, Yellowstone National Park, Wyoming, USA
355
281
-
Val
GAC
[ENA]
¢þ
>WENV181406900
OGCG01002347
[OGCG] hot springs metagenome; Joseph's Coat, Yellowstone National Park, Washington, USA
2357
2283
-
Val
GAC
[ENA]
¢þ
>W1911654457
QEFJ01000002
Thermoproteota
Sulfolobales archaeon SCGC AB-777_K20 [QEFJ]
56243
56169
-
Val
GAC
[ENA]
¡û
>W1911654473
QEFM01000003
Thermoproteota
Sulfolobales archaeon SCGC AB-777_J03 [QEFM]
94947
94873
-
Val
GAC
[ENA]
¡û
>ENV09004239
ADKL01000280
Hot springs metagenome ctg_1106426165452
789
863
+
Val
GAC
[ENA]
¡û
>W1610017997
APJY01000002
Thermoproteota
Sulfolobales archaeon Acd1 [APJY]
110497
110572
+
Val
GAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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