This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
Hot springs metagenome ctg_1106426165452
Anticodon = GCC
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.235414 (5 seq.)
>WENV181229147
OFEJ01000765
[OFEJ] sediment metagenome; Joseph's Coat, Yellowstone National Park, Wyoming, USA
87
10
-
Gly
GCC
[ENA]
¢þ
>WENV181406557
OGCG01000478
[OGCG] hot springs metagenome; Joseph's Coat, Yellowstone National Park, Washington, USA
2566
2489
-
Gly
GCC
[ENA]
¢þ
>WENV170668466
LAFJ01007321
[LAFJ] hot springs metagenome; hot springs water enriched for viruses sample NL10_1401_vDNA_Ovation_1.4g/mL
193
270
+
Gly
GCC
[ENA]
¢þ
>ENV09004247
ADKL01000492
Hot springs metagenome ctg_1106426165452
17180
17103
-
Gly
GCC
[ENA]
¡û
>W1610017984
APJY01000001
Thermoproteota
Sulfolobales archaeon Acd1 [APJY]
245007
245084
+
Gly
GCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK