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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Hot springs metagenome ctg_1106426165452
Anticodon = GCG
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.242916 (5 seq.)
>WENV181229186
OFEJ01001179
[OFEJ] sediment metagenome; Joseph's Coat, Yellowstone National Park, Wyoming, USA
2240
2165
-
Arg
GCG
[ENA]
¢þ
>WENV181406317
OGCG01000112
[OGCG] hot springs metagenome; Joseph's Coat, Yellowstone National Park, Washington, USA
19297
19222
-
Arg
GCG
[ENA]
¢þ
>WENV170668455
LAFI01011388
[LAFI] hot springs metagenome; hot springs water enriched for viruses sample NL10_1401_vDNA_Ovation_1.5g/mL
177
101
-
Arg
GCG
[ENA]
¢þ
>ENV09004252
ADKL01000507
Hot springs metagenome ctg_1106426165452
31854
31779
-
Arg
GCG
[ENA]
¡û
>W1610017996
APJY01000001
Thermoproteota
Sulfolobales archaeon Acd1 [APJY]
549731
549656
-
Arg
GCG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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