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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Hot springs metagenome ctg_1106426165452
Anticodon = GTA
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.8687 (5 seq.)
>WENV181406140
OGCG01000006
[OGCG] hot springs metagenome; Joseph's Coat, Yellowstone National Park, Washington, USA
142768
142860
+
Tyr
GTA
[ENA]
¢þ
>WENV170668528
LAFT01010174
[LAFT] hot springs metagenome; hot springs water enriched for viruses sample NL10_1401_vDNA_Ovation_1.3g/mL
165
72
-
Tyr
GTA
[ENA]
¢þ
>W1911654470
QEFM01000003
Thermoproteota
Sulfolobales archaeon SCGC AB-777_J03 [QEFM]
16948
17040
+
Tyr
GTA
[ENA]
¡û
>ENV09004246
ADKL01000484
Hot springs metagenome ctg_1106426165452
15520
15427
-
Tyr
GTA
[ENA]
¡û
>W1610018000
APJY01000002
Thermoproteota
Sulfolobales archaeon Acd1 [APJY]
185721
185628
-
Tyr
GTA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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