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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Hot springs metagenome ctg_1106426165452
Anticodon = TCG
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.242918 (7 seq.)
>WENV181228791
OFEH01005286
[OFEH] hypersaline lake metagenome; Grendel Spring, Yellowstone National Park, Wyoming, USA
786
711
-
Arg
TCG
[ENA]
¢þ
>WENV181229198
OFEJ01001394
[OFEJ] sediment metagenome; Joseph's Coat, Yellowstone National Park, Wyoming, USA
5524
5599
+
Arg
TCG
[ENA]
¢þ
>WENV181406341
OGCG01000135
[OGCG] hot springs metagenome; Joseph's Coat, Yellowstone National Park, Washington, USA
46514
46439
-
Arg
TCG
[ENA]
¢þ
>WENV170668467
LAFJ01008137
[LAFJ] hot springs metagenome; hot springs water enriched for viruses sample NL10_1401_vDNA_Ovation_1.4g/mL
316
393
+
Arg
TCG
[ENA]
¢þ
>W1911654479
QEFM01000032
Thermoproteota
Sulfolobales archaeon SCGC AB-777_J03 [QEFM]
204
129
-
Arg
TCG
[ENA]
¡û
>ENV09004255
ADKL01000511
Hot springs metagenome ctg_1106426165452
10515
10590
+
Arg
TCG
[ENA]
¡û
>W1610017988
APJY01000001
Thermoproteota
Sulfolobales archaeon Acd1 [APJY]
735620
735697
+
Arg
TCG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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