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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Hot springs metagenome ctg_1106426165452
Anticodon = TGG
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.235406 (6 seq.)
>WENV181228775
OFEH01004010
[OFEH] hypersaline lake metagenome; Grendel Spring, Yellowstone National Park, Wyoming, USA
965
889
-
Pro
TGG
[ENA]
¢þ
>WENV181229027
OFEJ01000078
[OFEJ] sediment metagenome; Joseph's Coat, Yellowstone National Park, Wyoming, USA
25680
25756
+
Pro
TGG
[ENA]
¢þ
>WENV181406249
OGCG01000047
[OGCG] hot springs metagenome; Joseph's Coat, Yellowstone National Park, Washington, USA
36687
36763
+
Pro
TGG
[ENA]
¢þ
>W1911654469
QEFM01000002
Thermoproteota
Sulfolobales archaeon SCGC AB-777_J03 [QEFM]
37670
37594
-
Pro
TGG
[ENA]
¡û
>ENV09004241
ADKL01000355
Hot springs metagenome ctg_1106426165452
10632
10708
+
Pro
TGG
[ENA]
¡û
>W1610017983
APJY01000001
Thermoproteota
Sulfolobales archaeon Acd1 [APJY]
176543
176619
+
Pro
TGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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