This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
Hot springs metagenome ctg_1106426165452
Anticodon = TTG
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.470505 (6 seq.)
>WENV181229267
OFEJ01002673
[OFEJ] sediment metagenome; Joseph's Coat, Yellowstone National Park, Wyoming, USA
3360
3285
-
Gln
TTG
[ENA]
¢þ
>W1911654460
QEFJ01000007
Thermoproteota
Sulfolobales archaeon SCGC AB-777_K20 [QEFJ]
17243
17168
-
Gln
TTG
[ENA]
¡û
>W1911654477
QEFM01000005
Thermoproteota
Sulfolobales archaeon SCGC AB-777_J03 [QEFM]
22092
22017
-
Gln
TTG
[ENA]
¡û
>ENV09004097
ADKH01001043
Hot springs metagenome ctg_1106445186506
996
921
-
Gln
TTG
[ENA]
¡û
>ENV09004254
ADKL01000510
Hot springs metagenome ctg_1106426165452
8213
8138
-
Gln
TTG
[ENA]
¡û
>W1610017995
APJY01000001
Thermoproteota
Sulfolobales archaeon Acd1 [APJY]
680122
680047
-
Gln
TTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK