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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Hot springs metagenome ctg_1106445180384
Anticodon = CGC
HIT:
2 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.556762 (2 seq.)
>WENV181406985
OGCG01003493
[OGCG] hot springs metagenome; Joseph's Coat, Yellowstone National Park, Washington, USA
3429
3502
+
Ala
CGC
[ENA]
¢þ
>ENV09004144
ADKI01001694
Hot springs metagenome ctg_1106445180384
611
538
-
Ala
CGC
[ENA]
¡û
Identical group No.669845 (2 seq.)
>WENV170668508
LAFT01002600
[LAFT] hot springs metagenome; hot springs water enriched for viruses sample NL10_1401_vDNA_Ovation_1.3g/mL
609
538
-
Ala
CGC
[ENA]
¢þ
>ENV09004121
ADKI01000597
Hot springs metagenome ctg_1106445180384
1009
1080
+
Ala
CGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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