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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Hot springs metagenome ctg_1106445180384
Anticodon = GCA
HIT:
2 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.716475 (3 seq.)
>WENV181407304
OGCG01015714
[OGCG] hot springs metagenome; Joseph's Coat, Yellowstone National Park, Washington, USA
1776
1849
+
Cys
GCA
[ENA]
¢þ
>ENV09004116
ADKI01000397
Hot springs metagenome ctg_1106445180384
1540
1467
-
Cys
GCA
[ENA]
¡û
>W1610018744
AQVK01000035
Euryarchaeota
euryarchaeote SCGC AAA261-E04 [AQVK]
3602
3529
-
Cys
GCA
[ENA]
¡û
Identical group No.807769 (3 seq.)
>WENV181228744
OFEH01002620
[OFEH] hypersaline lake metagenome; Grendel Spring, Yellowstone National Park, Wyoming, USA
496
426
-
Cys
GCA
[ENA]
¢þ
>WENV181406914
OGCG01002558
[OGCG] hot springs metagenome; Joseph's Coat, Yellowstone National Park, Washington, USA
3331
3401
+
Cys
GCA
[ENA]
¢þ
>ENV09004134
ADKI01001299
Hot springs metagenome ctg_1106445180384
827
757
-
Cys
GCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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